Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW50_RS07795 Genome accession   NZ_CP036040
Coordinates   1533043..1533645 (-) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus mycoides strain BPN573     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1528043..1538645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW50_RS07775 (EXW50_07940) dnaD 1528338..1529045 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  EXW50_RS07780 (EXW50_07945) nth 1529061..1529708 (+) 648 WP_215552655.1 endonuclease III -
  EXW50_RS07785 (EXW50_07950) - 1529712..1530230 (+) 519 WP_215552654.1 YpoC family protein -
  EXW50_RS07790 (EXW50_07955) - 1530256..1532976 (-) 2721 WP_215552653.1 penicillin-binding protein 1A -
  EXW50_RS07795 (EXW50_07960) recU 1533043..1533645 (-) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  EXW50_RS07800 (EXW50_07965) - 1533749..1534774 (+) 1026 WP_215552652.1 DUF2515 domain-containing protein -
  EXW50_RS29610 - 1535118..1535264 (-) 147 WP_306302660.1 phage portal protein -
  EXW50_RS07805 (EXW50_07970) - 1535383..1535625 (+) 243 WP_002011865.1 hypothetical protein -
  EXW50_RS07810 (EXW50_07975) - 1535641..1535985 (+) 345 WP_002011864.1 YppE family protein -
  EXW50_RS07815 (EXW50_07980) - 1536011..1536202 (-) 192 WP_012260642.1 YppF family protein -
  EXW50_RS07820 (EXW50_07985) - 1536379..1537041 (+) 663 WP_215552651.1 YppG family protein -
  EXW50_RS07825 (EXW50_07990) - 1537198..1537647 (+) 450 WP_215552650.1 CotD family spore coat protein -
  EXW50_RS07830 (EXW50_07995) - 1537704..1538258 (+) 555 WP_215552649.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=346128 EXW50_RS07795 WP_002030800.1 1533043..1533645(-) (recU) [Bacillus mycoides strain BPN573]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=346128 EXW50_RS07795 WP_002030800.1 1533043..1533645(-) (recU) [Bacillus mycoides strain BPN573]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment