Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EXW62_RS19435 Genome accession   NZ_CP036034
Coordinates   3852521..3854260 (-) Length   579 a.a.
NCBI ID   WP_215554157.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN57/2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3847521..3859260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS19415 (EXW62_19860) - 3847522..3848199 (-) 678 WP_215554154.1 hypothetical protein -
  EXW62_RS19420 (EXW62_19865) - 3848904..3849878 (-) 975 WP_215554155.1 tyrosine-type recombinase/integrase -
  EXW62_RS19425 (EXW62_19870) spo0A 3850029..3850823 (-) 795 WP_215554156.1 sporulation transcription factor Spo0A Regulator
  EXW62_RS19430 (EXW62_19880) spoIVB 3851110..3852402 (-) 1293 WP_033711018.1 SpoIVB peptidase -
  EXW62_RS19435 (EXW62_19885) recN 3852521..3854260 (-) 1740 WP_215554157.1 DNA repair protein RecN Machinery gene
  EXW62_RS19440 (EXW62_19890) argR 3854531..3854980 (-) 450 WP_002015076.1 arginine repressor ArgR -
  EXW62_RS19445 (EXW62_19895) - 3855123..3855962 (-) 840 WP_002160533.1 TlyA family RNA methyltransferase -
  EXW62_RS19450 (EXW62_19900) dxs 3855966..3857858 (-) 1893 WP_215554158.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EXW62_RS19455 (EXW62_19905) ispA 3858167..3859060 (-) 894 WP_215554159.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65675.94 Da        Isoelectric Point: 5.2160

>NTDB_id=346089 EXW62_RS19435 WP_215554157.1 3852521..3854260(-) (recN) [Bacillus mycoides strain BPN57/2]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGNRIVKQL
AIYQNVYKDYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIHKADLKMDEEYELTEERLKISNFEKIYKALGDAYRSLSG
DGQGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTRKQLTKLEGVIVKEATLLSTMRHELADHLTSAIHQELKELYMEKTKFEVRIM
KRVGNVEEPLVEGTPVKLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTDEKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=346089 EXW62_RS19435 WP_215554157.1 3852521..3854260(-) (recN) [Bacillus mycoides strain BPN57/2]
TTGTTATCGGAATTATCGATCAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACCGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCCATTATTATTGATGCAATTAGTTTGCTTGTTGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATAGAAGGATTATTCTATGTAGAAGATGACAAGCATCCATGTATCGCAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTGAAGCGTGACATCGCTGCGAACGGAAAAAGTGTCTG
TCGTGTAAATGGGAAACTTGTTACACTCAGCGTATTAAAAGAGATTGGAAAAACGCTAGTTGATATTCATGGACAGCATG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAAATCGCATTGTTAAACAATTG
GCTATATATCAAAATGTATATAAAGACTATGAGAAGTTAAAAAAACAGCTGAAATCTTTAAGTGAAAATGAACAACAAAT
GGCCCATCGTCTAGATTTAATTCAATTCCAACATGAAGAAATTCATAAGGCGGATTTAAAAATGGATGAAGAATATGAAT
TGACTGAGGAACGATTAAAAATCTCCAATTTTGAAAAGATTTATAAAGCATTAGGAGATGCGTATCGTTCGTTAAGTGGA
GACGGACAGGGATTAGATCACGTAAGAAATGCAATGGGACAAATGGAGAGTATTACGCACTTAGATGAAGCGTATCAAGA
AAATCATGATTCCATTGCAAATAGTTATTACTTATTAGAAGAAGTTGCATATCAGCTTAGAGAAAAGTTAGATATGATGG
AATATGATCCGAAACGTCTAGATGAAATTGAAACACGTTTGAATGAAATCCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTACATATTGAAAC
GACGAGAAAGCAGTTAACGAAATTAGAAGGTGTTATTGTAAAAGAAGCAACGTTGTTAAGTACTATGCGTCATGAGCTTG
CGGATCATCTTACAAGCGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGGGTAGGAAATGTAGAAGAACCTCTCGTGGAAGGAACACCGGTAAAACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACGAATCCGGGTGAACCGTTAAAGCCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTGAGT
GGTCGGGTTGCGCAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGACTCGCATTTATTTATTAGAAAACAAGTGGCGAATGATCGGACGATTACATCGGTTACTG
TGTTAAGTACGGATGAAAAAGTAACAGAAATTGCTCGAATGATTTCTGGTGTTGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTCAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599

Multiple sequence alignment