Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EXW62_RS19425 Genome accession   NZ_CP036034
Coordinates   3850029..3850823 (-) Length   264 a.a.
NCBI ID   WP_215554156.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN57/2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3845029..3855823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS19390 (EXW62_19835) - 3845140..3845325 (-) 186 WP_215554149.1 hypothetical protein -
  EXW62_RS19395 (EXW62_19840) - 3845389..3846273 (-) 885 WP_215554150.1 outer membrane protein assembly factor BamE -
  EXW62_RS19400 (EXW62_19845) - 3846339..3846809 (-) 471 WP_215554151.1 hypothetical protein -
  EXW62_RS19405 (EXW62_19850) - 3847105..3847284 (-) 180 WP_215554152.1 hypothetical protein -
  EXW62_RS19410 (EXW62_19855) - 3847316..3847525 (-) 210 WP_215554153.1 hypothetical protein -
  EXW62_RS19415 (EXW62_19860) - 3847522..3848199 (-) 678 WP_215554154.1 hypothetical protein -
  EXW62_RS19420 (EXW62_19865) - 3848904..3849878 (-) 975 WP_215554155.1 tyrosine-type recombinase/integrase -
  EXW62_RS19425 (EXW62_19870) spo0A 3850029..3850823 (-) 795 WP_215554156.1 sporulation transcription factor Spo0A Regulator
  EXW62_RS19430 (EXW62_19880) spoIVB 3851110..3852402 (-) 1293 WP_033711018.1 SpoIVB peptidase -
  EXW62_RS19435 (EXW62_19885) recN 3852521..3854260 (-) 1740 WP_215554157.1 DNA repair protein RecN Machinery gene
  EXW62_RS19440 (EXW62_19890) argR 3854531..3854980 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29607.38 Da        Isoelectric Point: 7.1180

>NTDB_id=346088 EXW62_RS19425 WP_215554156.1 3850029..3850823(-) (spo0A) [Bacillus mycoides strain BPN57/2]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKENATIRRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=346088 EXW62_RS19425 WP_215554156.1 3850029..3850823(-) (spo0A) [Bacillus mycoides strain BPN57/2]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGCTATGTTGCTGCTCAGGA
TGATATGGAAGTGATTGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGCTAAGACAACCT
AACGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAATGCTACCATTAGACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATCGATGGCAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATCGCAAAGAAATATAATACAACAGCAAGTCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCGATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

81.273

100

0.822

Multiple sequence alignment