Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EXW62_RS00530 Genome accession   NZ_CP036034
Coordinates   97579..98955 (+) Length   458 a.a.
NCBI ID   WP_002159617.1    Uniprot ID   J8FCK3
Organism   Bacillus mycoides strain BPN57/2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92579..103955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS00510 (EXW62_00510) ctsR 92778..93239 (+) 462 WP_002029353.1 transcriptional regulator CtsR -
  EXW62_RS00515 (EXW62_00515) - 93409..93957 (+) 549 WP_002159618.1 UvrB/UvrC motif-containing protein -
  EXW62_RS00520 (EXW62_00520) - 93962..95026 (+) 1065 WP_215554955.1 protein arginine kinase -
  EXW62_RS00525 (EXW62_00525) clpC 95049..97484 (+) 2436 WP_215554956.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  EXW62_RS00530 (EXW62_00530) radA 97579..98955 (+) 1377 WP_002159617.1 DNA repair protein RadA Machinery gene
  EXW62_RS00535 (EXW62_00535) disA 98959..100032 (+) 1074 WP_000392162.1 DNA integrity scanning diadenylate cyclase DisA -
  EXW62_RS00540 (EXW62_00540) - 100196..101299 (+) 1104 WP_016103294.1 PIN/TRAM domain-containing protein -
  EXW62_RS00545 (EXW62_00545) ispD 101316..101996 (+) 681 WP_215554957.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  EXW62_RS00550 (EXW62_00550) ispF 102110..102586 (+) 477 WP_000488386.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49842.55 Da        Isoelectric Point: 7.4250

>NTDB_id=346061 EXW62_RS00530 WP_002159617.1 97579..98955(+) (radA) [Bacillus mycoides strain BPN57/2]
MAKKKTKFTCQECGYQSPKYMGKCPGCGKWNTLVEEMEPVVSSRRLNYVNAIQSEVTKPRRLTEVETNSEARIETKFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIA
AHIEEMNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKATAPTDAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRAIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=346061 EXW62_RS00530 WP_002159617.1 97579..98955(+) (radA) [Bacillus mycoides strain BPN57/2]
ATGGCTAAAAAGAAAACAAAATTCACATGTCAAGAGTGTGGTTATCAGTCGCCAAAATATATGGGGAAATGTCCTGGGTG
TGGTAAATGGAATACGCTTGTTGAAGAGATGGAACCAGTTGTATCATCAAGGCGCCTTAATTATGTCAATGCAATTCAAT
CAGAAGTAACAAAACCAAGACGCTTAACAGAGGTAGAAACAAATTCTGAGGCGCGTATTGAAACGAAATTTCAAGAGTTT
AACCGTGTACTTGGTGGCGGGATTGTAGATGGATCTTTAGTACTTATTGGTGGAGACCCTGGGATTGGAAAATCAACATT
GTTATTACAAATTTCATCGCAATTAGCAGATTCTTCATATGATGTACTATACATATCAGGTGAGGAGTCAGCAAAGCAGA
TTAAACTTCGTGCAGATCGTTTGCATGTAAAGGGTAGTAATCTATTTGTTGTAGCAGAAACTGATTTACAACGAATTGCA
GCACACATTGAAGAGATGAATCCAGCTTTTGTTGTTATTGACTCCATTCAGACGATACATTTACCTGAAGTGACGTCAGC
CCCAGGAAGTGTAGCGCAAGTACGTGAATGTACAGCGGAATTAATGAAGCTTGCAAAGACGAAAGGGATTCCTATTTTTA
TCGTCGGACATGTGACGAAAGAAGGGGCAATTGCAGGACCACGTATGCTAGAACATATGGTTGATGCAGTTCTTTACTTT
GAAGGAGATCGTCACCATACATATCGTATTTTGCGAGCTGTGAAGAACCGTTTTGGTTCCACAAATGAAATGGGTATCTT
TGAAATGAAGGAACTAGGTCTTGCAGAAGTACTAAATCCTTCTGAAATTTTCCTTGAGGAACGTCCAGTTGGAGTTGCAG
GATCCACAGTGGTTGCTTCAATGGAAGGAACAAGACCGGTTTTAGTAGAAATACAAGCATTAATCTCCCCTACTAGTTTT
GGAAATCCTCGAAGAATGGCGACGGGAATTGATCATAATCGCGTTTCACTTATTATGGCAGTGCTAGAAAAAAGAACAGG
TTTATTGTTGCAAAATCAAGACGCATATTTAAAAGTCGCGGGTGGCTTGAAATTAGATGAACCAGCAATCGATTTAGCTG
TTGCCTTAAGTATTGCTTCAAGTTTCAGAGATAAAGCTACTGCACCAACCGATGCGGTAATAGGAGAAGTAGGCCTAACT
GGAGAAATAAGAAGAGTATCAAGAATTGAACAACGTGTACAAGAAGCAGCAAAATTAGGATTTCAACGTGCTATTATTCC
TAGAAAAAATTTGGGAGGATGGACAATTCCAGATGGGATTGAGGTAGTAGGTGTTTCTAATTTAGGAGAGGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8FCK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.51

100

0.747
  radA Streptococcus pneumoniae Rx1

64.018

98.908

0.633
  radA Streptococcus pneumoniae D39

64.018

98.908

0.633
  radA Streptococcus pneumoniae R6

64.018

98.908

0.633
  radA Streptococcus pneumoniae TIGR4

64.018

98.908

0.633
  radA Streptococcus mitis SK321

64.018

98.908

0.633
  radA Streptococcus mitis NCTC 12261

63.797

98.908

0.631

Multiple sequence alignment