Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EXW38_RS20575 Genome accession   NZ_CP036026
Coordinates   3978637..3979431 (-) Length   264 a.a.
NCBI ID   WP_016100158.1    Uniprot ID   A0A1G4EVS3
Organism   Bacillus mycoides strain BPN54/2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3973637..3984431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW38_RS20550 (EXW38_20860) - 3974249..3976321 (-) 2073 WP_088079349.1 sigma-54 interaction domain-containing protein -
  EXW38_RS20555 (EXW38_20865) - 3976459..3976692 (+) 234 WP_002111735.1 DUF2627 domain-containing protein -
  EXW38_RS20560 (EXW38_20870) - 3976735..3977469 (-) 735 WP_002111737.1 glycerophosphodiester phosphodiesterase -
  EXW38_RS20565 (EXW38_20875) - 3977520..3977666 (+) 147 WP_001247671.1 YycC family protein -
  EXW38_RS20570 (EXW38_20880) - 3977815..3978387 (-) 573 WP_215572031.1 PRK06770 family protein -
  EXW38_RS20575 (EXW38_20885) spo0A 3978637..3979431 (-) 795 WP_016100158.1 sporulation transcription factor Spo0A Regulator
  EXW38_RS20580 (EXW38_20895) spoIVB 3979718..3981010 (-) 1293 WP_033711018.1 SpoIVB peptidase -
  EXW38_RS20585 (EXW38_20900) recN 3981129..3982868 (-) 1740 WP_016106127.1 DNA repair protein RecN Machinery gene
  EXW38_RS20590 (EXW38_20905) argR 3983139..3983588 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29595.37 Da        Isoelectric Point: 7.1180

>NTDB_id=346038 EXW38_RS20575 WP_016100158.1 3978637..3979431(-) (spo0A) [Bacillus mycoides strain BPN54/2]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKENSTIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=346038 EXW38_RS20575 WP_016100158.1 3978637..3979431(-) (spo0A) [Bacillus mycoides strain BPN54/2]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGCTATGTTGCTGCTCAGGA
TGATATGGAAGTTATTGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AACGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAATTCCACCATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATTGATGGCAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATCGCAAAGAAATATAATACAACAGCAAGTCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCGATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G4EVS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

81.273

100

0.822

Multiple sequence alignment