Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GFD20_RS24975 Genome accession   NZ_CP045768
Coordinates   5455264..5455887 (-) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain CFSAN084950     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5450264..5460887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFD20_RS24950 (GFD20_24950) - 5451046..5451969 (-) 924 WP_121363576.1 choline ABC transporter substrate-binding protein -
  GFD20_RS24955 (GFD20_24955) betC 5451986..5453497 (-) 1512 WP_031693462.1 choline-sulfatase -
  GFD20_RS24960 (GFD20_24960) - 5453610..5454524 (+) 915 WP_003122286.1 choline sulfate utilization transcriptional regulator -
  GFD20_RS24965 (GFD20_24965) - 5454535..5454912 (+) 378 WP_003114635.1 DOPA 4,5-dioxygenase family protein -
  GFD20_RS24970 (GFD20_24970) - 5454891..5455256 (-) 366 WP_003097330.1 Hpt domain-containing protein -
  GFD20_RS24975 (GFD20_24975) letA 5455264..5455887 (-) 624 WP_003111192.1 response regulator transcription factor Regulator
  GFD20_RS24980 (GFD20_24980) trpA 5456073..5456879 (-) 807 WP_009875638.1 tryptophan synthase subunit alpha -
  GFD20_RS24985 (GFD20_24985) trpB 5456876..5458084 (-) 1209 WP_019484351.1 tryptophan synthase subunit beta -
  GFD20_RS24990 (GFD20_24990) trpI 5458188..5459075 (+) 888 WP_023095011.1 trpBA operon transcriptional activator TrpI -
  GFD20_RS24995 (GFD20_24995) - 5459176..5459391 (+) 216 WP_003097345.1 dodecin -
  GFD20_RS25000 (GFD20_25000) - 5459575..5459802 (+) 228 WP_003097347.1 DUF1161 domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=345930 GFD20_RS24975 WP_003111192.1 5455264..5455887(-) (letA) [Pseudomonas aeruginosa strain CFSAN084950]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=345930 GFD20_RS24975 WP_003111192.1 5455264..5455887(-) (letA) [Pseudomonas aeruginosa strain CFSAN084950]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTACAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTTCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGAGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362