Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EXW33_RS05890 Genome accession   NZ_CP036014
Coordinates   1187379..1189118 (-) Length   579 a.a.
NCBI ID   WP_000947741.1    Uniprot ID   A0A2B7E0N6
Organism   Bacillus toyonensis strain BPN45/4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1182379..1194118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW33_RS05875 (EXW33_06055) - 1182559..1183977 (-) 1419 WP_001193753.1 membrane protein -
  EXW33_RS05880 (EXW33_06060) spo0A 1184879..1185673 (-) 795 WP_000411416.1 sporulation transcription factor Spo0A Regulator
  EXW33_RS05885 (EXW33_06070) spoIVB 1185962..1187260 (-) 1299 WP_002048975.1 SpoIVB peptidase -
  EXW33_RS05890 (EXW33_06075) recN 1187379..1189118 (-) 1740 WP_000947741.1 DNA repair protein RecN Machinery gene
  EXW33_RS05895 (EXW33_06080) argR 1189380..1189829 (-) 450 WP_001032581.1 arginine repressor ArgR -
  EXW33_RS05900 (EXW33_06085) - 1189972..1190814 (-) 843 WP_001274740.1 TlyA family RNA methyltransferase -
  EXW33_RS05905 (EXW33_06090) dxs 1190818..1192710 (-) 1893 WP_000366442.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EXW33_RS05910 (EXW33_06095) ispA 1193012..1193902 (-) 891 WP_000150368.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65821.87 Da        Isoelectric Point: 4.7945

>NTDB_id=345863 EXW33_RS05890 WP_000947741.1 1187379..1189118(-) (recN) [Bacillus toyonensis strain BPN45/4]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQTVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLRENLDMMEYDPNRLDEIETRLNEIRMLKRKYGNN
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGIASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=345863 EXW33_RS05890 WP_000947741.1 1187379..1189118(-) (recN) [Bacillus toyonensis strain BPN45/4]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACAGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGTTATTTTATGTGGAAGACGACAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATTGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGGAAACTTGTCACCCTTAGTATATTAAAAGAGATTGGCAAAACGCTTGTTGATATTCATGGACAGCACG
AAACGCAAGACTTAATGAATGAAGAGCGACATCTGTTTATGCTCGATCATTTTGATGGGGAGCGTATTGTTAAACAGTTG
GATATATATCAAACTGTTTACGCTGACTATGAGAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATCCGTAAGGCTGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCT
GACGGACAAGGATTAGATAATGTAAGAAGTGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTATATCAAGA
AAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTATCAACTTAGAGAAAATCTCGATATGATGG
AATATGATCCGAATCGTCTAGATGAAATTGAAACACGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATAAT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAGCAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAGTTAAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTGAGAATCATG
AAGAGAGAAGGAAATGCAGAAGAACCTCTTGTGGAAGGCGCACCGGTGCGCCTTACGGCGGACGGCTATGATCACGTGGA
GTTTTATATTTCAACGAATCCCGGTGAACCGTTAAAACCACTTTCAAAGGTCGCTTCAGGTGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGTATTTTTTCTAAACATCAAGGTATTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTGAGT
GGTCGAGTTGCACAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCACAAGTGCTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAGGTAGCGAATGATCGGACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B7E0N6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.758

100

0.598

Multiple sequence alignment