Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW40_RS07875 Genome accession   NZ_CP036009
Coordinates   1530263..1530865 (-) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus mycoides strain BPN43/2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1525263..1535865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW40_RS07855 (EXW40_07955) dnaD 1525548..1526255 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  EXW40_RS07860 (EXW40_07960) nth 1526271..1526918 (+) 648 WP_000933020.1 endonuclease III -
  EXW40_RS07865 (EXW40_07965) - 1526922..1527440 (+) 519 WP_002030796.1 YpoC family protein -
  EXW40_RS07870 (EXW40_07970) - 1527467..1530196 (-) 2730 WP_215587535.1 penicillin-binding protein 1A -
  EXW40_RS07875 (EXW40_07975) recU 1530263..1530865 (-) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  EXW40_RS07880 (EXW40_07980) - 1530969..1531994 (+) 1026 WP_215587536.1 DUF2515 domain-containing protein -
  EXW40_RS29840 - 1532338..1532484 (-) 147 WP_306302660.1 phage portal protein -
  EXW40_RS07885 (EXW40_07985) - 1532603..1532845 (+) 243 WP_002030820.1 hypothetical protein -
  EXW40_RS07890 (EXW40_07990) - 1532861..1533205 (+) 345 WP_002011864.1 YppE family protein -
  EXW40_RS07895 (EXW40_07995) - 1533231..1533422 (-) 192 WP_002030817.1 YppF family protein -
  EXW40_RS07900 (EXW40_08000) - 1533600..1534262 (+) 663 WP_215587537.1 YppG family protein -
  EXW40_RS07905 (EXW40_08005) - 1534419..1534871 (+) 453 WP_002064549.1 CotD family spore coat protein -
  EXW40_RS07910 (EXW40_08010) - 1534928..1535482 (+) 555 WP_002030808.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=345823 EXW40_RS07875 WP_002030800.1 1530263..1530865(-) (recU) [Bacillus mycoides strain BPN43/2]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=345823 EXW40_RS07875 WP_002030800.1 1530263..1530865(-) (recU) [Bacillus mycoides strain BPN43/2]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment