Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GHR20_RS30590 Genome accession   NZ_CP045740
Coordinates   6887623..6888249 (-) Length   208 a.a.
NCBI ID   WP_153814983.1    Uniprot ID   -
Organism   Streptomyces sp. SUK 48     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6882623..6893249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - clpP 6887623..6888249 (-) 627 - - Regulator

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23159.30 Da        Isoelectric Point: 4.7184

>NTDB_id=345755 GHR20_RS30590 WP_153814983.1 6887623..6888249(-) (clpP) [Streptomyces sp. SUK 48]
MSRPSARYVLPEFTERTNFGERRLDPYSKLFENRVVFLGTPLDEAAAGDVITQFMHLEHLDPDRDITLYLNCPGGSFHAM
TAVYDTMRYVTCEVQTYCLGQAASVGAVLLAAGTPGKRFTLPGARVVLSQPELPEPAQGQPSDLLIQAEELVRLRTLMEE
MLVRHTGRTEEQVHQDLERDLMLDAPGAQSYGLVDGVVPSRRDLPGER

Nucleotide


Download         Length: 627 bp        

>NTDB_id=345755 GHR20_RS30590 WP_153814983.1 6887623..6888249(-) (clpP) [Streptomyces sp. SUK 48]
ATGTCCCGACCGTCCGCCCGTTACGTCCTGCCCGAGTTCACCGAGCGCACCAACTTCGGGGAGCGCCGGCTCGATCCCTA
CTCGAAGCTGTTCGAGAACCGGGTCGTCTTCCTCGGGACGCCCCTGGACGAGGCGGCGGCCGGCGATGTGATCACCCAGT
TCATGCACCTCGAACACCTGGACCCGGACCGGGACATCACGCTCTACCTGAACTGCCCGGGCGGCTCGTTCCACGCGATG
ACGGCCGTCTACGACACGATGCGGTACGTCACCTGCGAGGTGCAGACGTACTGCCTGGGCCAGGCCGCCTCGGTCGGCGC
CGTGCTGCTGGCCGCCGGCACCCCCGGCAAGCGGTTCACCCTGCCCGGCGCGCGCGTGGTGCTCTCCCAGCCCGAGCTGC
CCGAGCCGGCGCAGGGCCAGCCGAGCGATCTGCTCATCCAGGCCGAGGAACTGGTCCGGCTGCGGACCCTGATGGAGGAG
ATGCTGGTCCGGCACACCGGGCGCACCGAGGAGCAGGTCCACCAGGACCTGGAGCGCGATCTCATGCTGGACGCGCCGGG
CGCGCAGTCGTACGGCCTGGTGGACGGCGTGGTGCCCAGCCGCCGGGACCTCCCCGGCGAGCGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

40

93.75

0.375
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.212

90.865

0.365
  clpP Lactococcus lactis subsp. cremoris KW2

38.462

93.75

0.361