Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EXW30_RS05900 Genome accession   NZ_CP035962
Coordinates   1145516..1147342 (+) Length   608 a.a.
NCBI ID   WP_131229707.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN07/3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140516..1152342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW30_RS05880 (EXW30_06010) - 1140727..1141401 (-) 675 WP_131229705.1 TerC family protein -
  EXW30_RS05885 (EXW30_06015) mecA 1141839..1142522 (+) 684 WP_002158885.1 adaptor protein MecA Regulator
  EXW30_RS05890 (EXW30_06020) - 1142595..1144139 (+) 1545 WP_002149818.1 cardiolipin synthase -
  EXW30_RS05895 (EXW30_06025) - 1144230..1145465 (+) 1236 WP_215570612.1 competence protein CoiA -
  EXW30_RS05900 (EXW30_06030) pepF 1145516..1147342 (+) 1827 WP_131229707.1 oligoendopeptidase F Regulator
  EXW30_RS05905 - 1147489..1147662 (-) 174 WP_000748141.1 hypothetical protein -
  EXW30_RS05910 (EXW30_06035) - 1147892..1148785 (-) 894 WP_215570003.1 ClpXP adapter SpxH family protein -
  EXW30_RS05915 (EXW30_06040) - 1148785..1149183 (-) 399 WP_000043388.1 hypothetical protein -
  EXW30_RS05920 (EXW30_06045) - 1149368..1149946 (-) 579 WP_002158881.1 CYTH domain-containing protein -
  EXW30_RS05925 (EXW30_06050) - 1150091..1150462 (+) 372 WP_002149812.1 hypothetical protein -
  EXW30_RS05930 (EXW30_06055) - 1150493..1151131 (+) 639 WP_002158880.1 GTP pyrophosphokinase family protein -
  EXW30_RS05935 (EXW30_06060) - 1151150..1151947 (+) 798 WP_000673196.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70291.68 Da        Isoelectric Point: 4.6458

>NTDB_id=345311 EXW30_RS05900 WP_131229707.1 1145516..1147342(+) (pepF) [Bacillus mycoides strain BPN07/3]
MAEKNTVKSLPNRNEIEEANTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLQENRELSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGTYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLIESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
TVKYEEAQEMLLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDKEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=345311 EXW30_RS05900 WP_131229707.1 1145516..1147342(+) (pepF) [Bacillus mycoides strain BPN07/3]
ATGGCTGAAAAAAATACAGTAAAATCATTACCAAATCGCAATGAGATTGAAGAAGCAAACACATGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTGCCAAAGTTAACTGAATTTAAAGGGA
AGCTTGGCGACTCTGCAGACAATTTGCTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGATCGCGCAACAAATTTATA
CTCACAAGTATCTAGTAGCACAGCTTATATCGTACCTGAAATTTTATCTATTTCAGAAGATACGCTACAAACTTTCTTAC
AAGAAAATCGAGAACTAAGTGTATATGAGCATGCATTAGAAGAAATTACACGTCAACGTCCGCACGTATTATCTGAGGCA
GAAGAAGCGTTATTAGCAGAAGCATCTGAAGTGATGAGTGCATCAAGTAATACATTCGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAGGTAGAAATAACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACATACGGAACATATAAGAACACATTTGCAAGTACG
CTAAGCGGGGCTGTGAAACGTAATAATTTCAATGCACGCGTTCGTAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAGGCGGTGTATGATCAACTTATTGAATCGGTAAATGATAATTTACACTTACTACATCGATACATTG
ATATTCGTAAGCGTGCCCTAGGTCTTGATGAGCTTCATATGTACGATTTATATACACCACTTGTACCAGAAGTGAAAATG
ACTGTGAAGTATGAAGAAGCGCAAGAAATGTTATTGAAATCTTTAAATGTACTTGGTGATGAATATGTTGAAATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATACGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATACG
GAACAAATCCATATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCA
GTGCATAGTTACTATACAAGGAAGACACAACCGCACGTATATGGTGATTATTCAATCTTCGTTGCAGAAGTAGCTTCAAC
TTGTAATGAAGCGCTTCTAAATGATTACTTATTGAAGACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCACT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACAATGTTTGCAGAGTTCGAGCATATCATTCATAAAAAAGTACAA
GAAGGACATGCTGTTACGCCAGATATGTTAACGGAGATTTACTACGATTTAAATAAGAAATATTTCGGGGACGCTTTAGT
AATTGATAAAGAAATTGGTTTAGAATGGTCTCGTATTCCGCACTTCTATTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACAGCTTTGTCAAAACAAATTTTAGAAGAGGGACAACCAGCAGTAGAACGTTACATTAACGAATTC
TTAAAAGCTGGAAGCTCTGATTACCCAATTGAAGTGTTGAAAAAAGCAGGAGTAGATATGGCATCGCCAGAACCTGTAAA
AGAAGCATTACAAGTATTTGAAGAGAAGTTAAATGAATTAGAAGCACTATTGTTTGAAGAGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.422

97.533

0.492

Multiple sequence alignment