Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW58_RS24055 Genome accession   NZ_CP035953
Coordinates   4650416..4651744 (-) Length   442 a.a.
NCBI ID   WP_252198781.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN03/1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4645416..4656744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW58_RS24030 (EXW58_24400) - 4646885..4647739 (-) 855 WP_215580107.1 WYL domain-containing protein -
  EXW58_RS24035 (EXW58_24405) - 4647822..4648265 (+) 444 WP_215580109.1 VOC family protein -
  EXW58_RS24040 (EXW58_24410) raiA 4648524..4649066 (-) 543 WP_002159874.1 ribosome-associated translation inhibitor RaiA -
  EXW58_RS24045 (EXW58_24415) cspC 4649388..4649585 (-) 198 WP_033710669.1 cold shock protein CspC -
  EXW58_RS24050 (EXW58_24420) - 4649712..4650416 (-) 705 WP_002112877.1 ComF family protein -
  EXW58_RS24055 (EXW58_24425) comFA 4650416..4651744 (-) 1329 WP_252198781.1 ATP-dependent helicase ComFA Machinery gene
  EXW58_RS24060 (EXW58_24430) - 4651896..4653372 (-) 1477 Protein_4703 NlpC/P60 family protein -
  EXW58_RS24065 (EXW58_24435) - 4653493..4653807 (-) 315 WP_002112882.1 helix-turn-helix domain-containing protein -
  EXW58_RS24070 (EXW58_24440) - 4653981..4654823 (-) 843 WP_002112883.1 DegV family protein -
  EXW58_RS24075 (EXW58_24445) - 4655062..4655697 (+) 636 WP_215580113.1 YigZ family protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 50181.31 Da        Isoelectric Point: 9.0350

>NTDB_id=345289 EXW58_RS24055 WP_252198781.1 4650416..4651744(-) (comFA) [Bacillus mycoides strain BPN03/1]
MLEELSSDLQDKLDHLKKNRDVVCVQGVIKESSKYMCQRCGNIEQRLFASFLCKRCNKVCTYCRECITMGRVSECAVLVR
GIAEISGENYLNPLQWEGVLSAGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIATPRTDVVL
ELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLHYAVNEAMKEEAARI
YLTATPDEKWKRKLRNGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLMRKKIPRALLQWLNMYLSKRYPIFLFVPHVRY
VEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGTEEEIFSESALVQIAGRAG
RSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=345289 EXW58_RS24055 WP_252198781.1 4650416..4651744(-) (comFA) [Bacillus mycoides strain BPN03/1]
CTGTTAGAAGAACTTTCTTCAGATTTGCAGGATAAATTGGATCATTTGAAAAAGAATCGAGACGTCGTTTGTGTACAAGG
GGTAATTAAGGAATCTTCAAAATATATGTGCCAGCGCTGCGGAAATATAGAGCAGCGACTATTTGCATCATTTCTATGTA
AAAGGTGCAATAAAGTATGTACGTATTGCCGGGAATGTATAACGATGGGCAGGGTAAGTGAATGTGCTGTACTTGTTCGC
GGGATTGCTGAAATAAGCGGAGAAAATTATTTGAATCCGTTACAGTGGGAAGGCGTTTTGTCTGCTGGTCAGGAGTTAGC
TGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGTGCGGGGCTGGAAAAACAGAAA
TGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAGAGAGTTTGTATTGCAACGCCGAGAACGGACGTTGTACTT
GAATTAGCACCGAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGGAGGGAGTTTAGACCGAGAAAA
AGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCCATGTCATGATTGTAGATGAGA
TAGATGCTTTTCCATATCATGCGGATAAGATGTTGCATTATGCAGTAAACGAAGCGATGAAAGAGGAGGCAGCACGTATT
TATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAATTGCGGAATGGTAAGCAAAAAGGGGTTATTATTTCAGGACG
TTATCATCGTCATCCATTGCCAGTCCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGGGTCTTATGCGTAAAAAAATTC
CTCGTGCTTTATTACAATGGTTAAATATGTACTTATCTAAACGATACCCCATTTTTCTATTTGTTCCTCATGTGCGATAT
GTAGAAGAAATTAGTCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGCAGAAGATCCGGCGAGAAAAGA
GAAGGTAGCAGCTTTCAGAAAGGGAGAAATCCCTTTATTAGTTACAACGACAATTTTGGAACGAGGAGTAACTGTGAAAA
ATTTACAAGTGGCAGTTTTAGGAACTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTTCAAATTGCAGGGCGTGCTGGC
AGAAGCTCTGATGAACCGCATGGAGATGTCATCTATTTTCATTATGGAAAGACAGAGGCGATGGTGCGTGCGAAAAAACA
TATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(306-402)

Type III restriction enzyme, res subunit (ResIII)

(100-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.435

94.57

0.486
  comFA Latilactobacillus sakei subsp. sakei 23K

40.955

90.045

0.369

Multiple sequence alignment