Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EXW58_RS05840 Genome accession   NZ_CP035953
Coordinates   1146118..1147944 (+) Length   608 a.a.
NCBI ID   WP_215580914.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN03/1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1141118..1152944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW58_RS05820 (EXW58_05915) - 1141329..1142003 (-) 675 WP_002158886.1 TerC family protein -
  EXW58_RS05825 (EXW58_05920) mecA 1142441..1143124 (+) 684 WP_215580912.1 adaptor protein MecA Regulator
  EXW58_RS05830 (EXW58_05925) - 1143197..1144741 (+) 1545 WP_088098799.1 cardiolipin synthase -
  EXW58_RS05835 (EXW58_05930) - 1144832..1146067 (+) 1236 WP_215582002.1 competence protein CoiA family protein -
  EXW58_RS05840 (EXW58_05935) pepF 1146118..1147944 (+) 1827 WP_215580914.1 oligoendopeptidase F Regulator
  EXW58_RS05845 (EXW58_05940) - 1148494..1149387 (-) 894 WP_215580916.1 ClpXP adapter SpxH family protein -
  EXW58_RS05850 (EXW58_05945) - 1149387..1149785 (-) 399 WP_016104183.1 group 2 hemoglobin yjbI -
  EXW58_RS05855 (EXW58_05950) - 1149970..1150548 (-) 579 WP_002158881.1 CYTH domain-containing protein -
  EXW58_RS05860 (EXW58_05955) - 1150693..1151064 (+) 372 WP_215580918.1 hypothetical protein -
  EXW58_RS05865 (EXW58_05960) - 1151095..1151733 (+) 639 WP_002201371.1 GTP pyrophosphokinase family protein -
  EXW58_RS05870 (EXW58_05965) - 1151752..1152549 (+) 798 WP_000673196.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70331.71 Da        Isoelectric Point: 4.6458

>NTDB_id=345263 EXW58_RS05840 WP_215580914.1 1146118..1147944(+) (pepF) [Bacillus mycoides strain BPN03/1]
MAEKNTVKSLPNRNEIEEANTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSNTAYIVPEILSISEDTLQTFLQENRELSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGTYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLIESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQEMLLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDKEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=345263 EXW58_RS05840 WP_215580914.1 1146118..1147944(+) (pepF) [Bacillus mycoides strain BPN03/1]
ATGGCTGAAAAAAATACAGTAAAATCATTACCAAATCGCAATGAGATTGAAGAAGCAAACACATGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTGCCAAAGTTAACTGAATTTAAAGGGA
AGCTTGGCGACTCTGCAGACAATTTGCTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGATCGCGCAACAAATTTATA
CTCACAAGTATCTAGTAACACAGCTTATATCGTACCTGAAATTTTATCTATTTCAGAAGATACATTGCAAACTTTCTTAC
AAGAAAATCGAGAACTAAGTGTATATGAGCATGCATTAGAAGAAATTACACGTCAACGTCCGCACGTATTATCTGAGGCA
GAAGAAGCGTTATTAGCAGAAGCATCTGAAGTGATGAGTGCATCAAGTAATACATTCGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAGGTAGAAATAACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACATACGGAACATATAAGAACACATTTGCAAGTACG
TTAAGCGGGGCTGTGAAACGTAATAATTTCAATGCACGCGTTCGTAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAGGCGGTGTATGATCAACTTATTGAATCGGTAAATGATAATTTACACTTACTACATCGATACATTG
ATATTCGTAAGCGTGCCCTAGGTCTTGATGAGCTTCATATGTACGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAGTATGAAGAAGCGCAAGAAATGTTATTGAAATCTTTAAATGTACTTGGTGATGAATATGTTGAAATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATACGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATACG
GAACAAATCCATATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCA
GTGCATAGTTACTATACAAGGAAGACACAACCGCACGTATATGGTGATTATTCAATCTTCGTTGCAGAAGTAGCTTCAAC
TTGTAATGAAGCGCTTCTAAATGATTACTTATTGAAGACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCACT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACAATGTTTGCAGAGTTCGAGCATATCATTCATAAAAAAGTACAA
GAAGGACATGCTGTTACGCCAGATATGTTAACGGAGATTTACTACGATTTAAATAAGAAATATTTCGGGGACGCTTTAGT
AATTGATAAAGAAATCGGTTTAGAATGGTCTCGTATTCCGCACTTCTATTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACAGCTTTGTCAAAACAAATTTTAGAAGAGGGACAACCAGCAGTAGAACGTTACATTAACGAATTC
TTAAAAGCTGGAAGCTCTGATTACCCAATTGAAGTGTTGAAAAAAGCAGGAGTAGATATGGCATCGCCAGAACCTGTAAA
AGAAGCATTACAAGTATTTGAAGAGAAGTTAAATGAATTAGAAGCACTATTGTTTGAAGAGAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.422

97.533

0.492

Multiple sequence alignment