Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HIB_RS02900 Genome accession   NC_016809
Coordinates   558685..559287 (+) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae 10810     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 553685..564287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS02885 (HIB_05490) - 554554..557148 (+) 2595 WP_015701649.1 penicillin-binding protein 1A -
  HIB_RS02890 (HIB_05500) - 557225..558070 (+) 846 WP_015701650.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  HIB_RS02895 (HIB_05510) - 558223..558552 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  HIB_RS02900 (HIB_05520) recR 558685..559287 (+) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  HIB_RS02905 (HIB_05530) - 559303..561258 (+) 1956 WP_015701651.1 DNA topoisomerase III -
  HIB_RS02910 (HIB_05540) secG 561367..561708 (+) 342 WP_005649335.1 preprotein translocase subunit SecG -
  HIB_RS02920 (HIB_05550) - 562036..563262 (+) 1227 WP_015701652.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=34526 HIB_RS02900 WP_005626527.1 558685..559287(+) (recR) [Haemophilus influenzae 10810]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=34526 HIB_RS02900 WP_005626527.1 558685..559287(+) (recR) [Haemophilus influenzae 10810]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAGCGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGTCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCTGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGACCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACGGTGGAAGGCGATGCTACAGCAAACTACATTGCTGAAATG
TGCCGCCAACACAATATTAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment