Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GFB63_RS07710 Genome accession   NZ_CP045596
Coordinates   1502447..1503043 (+) Length   198 a.a.
NCBI ID   WP_011225694.1    Uniprot ID   P96053
Organism   Streptococcus thermophilus strain TK-P3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1497447..1508043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS07685 (GFB63_07895) - 1497581..1497793 (+) 213 WP_084828597.1 alpha/beta fold hydrolase -
  GFB63_RS07690 (GFB63_07900) - 1498042..1498233 (+) 192 WP_002950214.1 alpha/beta fold hydrolase -
  GFB63_RS07695 (GFB63_07905) - 1498407..1499261 (+) 855 WP_023909517.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  GFB63_RS07700 (GFB63_07910) - 1499265..1500101 (+) 837 WP_084828598.1 NAD(P)H-hydrate dehydratase -
  GFB63_RS07705 (GFB63_07915) pbp2b 1500223..1502337 (+) 2115 WP_193838223.1 penicillin-binding protein PBP2B -
  GFB63_RS07710 (GFB63_07920) recR 1502447..1503043 (+) 597 WP_011225694.1 recombination mediator RecR Machinery gene
  GFB63_RS07715 - 1503185..1503984 (+) 800 Protein_1480 PRD domain-containing protein -
  GFB63_RS07720 (GFB63_07935) ybeY 1504204..1504701 (+) 498 WP_100262183.1 rRNA maturation RNase YbeY -
  GFB63_RS07725 (GFB63_07940) - 1504682..1505086 (+) 405 WP_002946201.1 diacylglycerol kinase family protein -
  GFB63_RS07730 (GFB63_07945) era 1505105..1506004 (+) 900 WP_002950226.1 GTPase Era -
  GFB63_RS07735 (GFB63_07950) mutM 1506051..1506872 (+) 822 WP_024009805.1 DNA-formamidopyrimidine glycosylase -
  GFB63_RS07740 (GFB63_07955) coaE 1506869..1507462 (+) 594 WP_014621355.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21767.98 Da        Isoelectric Point: 4.5326

>NTDB_id=345256 GFB63_RS07710 WP_011225694.1 1502447..1503043(+) (recR) [Streptococcus thermophilus strain TK-P3A]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=345256 GFB63_RS07710 WP_011225694.1 1502447..1503043(+) (recR) [Streptococcus thermophilus strain TK-P3A]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAACTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATCAGCATGTCTGATGAAGATGTTAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCACGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96053

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475