Detailed information NTG0345215

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: GFB63_RS04225
• Genome accession: NZ_CP045596
• Coordinates: 823597..824697 (+)
• Length: 366 a.a.
• NCBI ID: WP_084829190.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain TK-P3A
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 818597..829697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFB63_RS04200 (GFB63_04320)	pgsA	819137..819679 (-)	543	WP_084826205.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
GFB63_RS04205 (GFB63_04325)	-	819692..820549 (-)	858	WP_084829187.1	helix-turn-helix transcriptional regulator	-
GFB63_RS04210 (GFB63_04330)	yfmH	820608..821888 (-)	1281	WP_100273607.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
GFB63_RS04215 (GFB63_04335)	yfmF	821890..823140 (-)	1251	WP_100273271.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
GFB63_RS04220 (GFB63_04340)	yaaA	823218..823594 (+)	377	Protein_842	S4 domain-containing protein YaaA	-
GFB63_RS04225 (GFB63_04345)	recF	823597..824697 (+)	1101	WP_084829190.1	DNA replication/repair protein RecF	Machinery gene
GFB63_RS04230 (GFB63_04350)	guaB	824866..826347 (-)	1482	WP_084829191.1	IMP dehydrogenase	-
GFB63_RS04235 (GFB63_04355)	trpS	826524..827546 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
GFB63_RS04240 (GFB63_04360)	-	827974..828846 (+)	873	WP_064355694.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42247.38 Da
• Isoelectric Point: 8.9610

>NTDB_id=345215 GFB63_RS04225 WP_084829190.1 823597..824697(+) (recF) [Streptococcus thermophilus strain TK-P3A]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVRRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLRFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLENIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=345215 GFB63_RS04225 WP_084829190.1 823597..824697(+) (recF) [Streptococcus thermophilus strain TK-P3A]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCGTCGTCATAGTGGAAAT
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAGATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTGATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAATATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432