Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   C9E88_RS14635 Genome accession   NZ_CP035934
Coordinates   3108967..3111189 (+) Length   740 a.a.
NCBI ID   WP_106985525.1    Uniprot ID   -
Organism   Acinetobacter cumulans strain WCHAc060092     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3103967..3116189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E88_RS14610 (C9E88_005780) - 3104918..3105256 (-) 339 WP_106986759.1 tRNA-binding protein -
  C9E88_RS14615 (C9E88_005775) - 3105468..3105803 (-) 336 WP_106986760.1 hypothetical protein -
  C9E88_RS14620 (C9E88_005770) - 3105994..3106926 (-) 933 WP_120364252.1 IS5 family transposase -
  C9E88_RS14625 (C9E88_005765) gspG 3107134..3107571 (-) 438 WP_106985523.1 type II secretion system major pseudopilin GspG -
  C9E88_RS14630 (C9E88_005760) gspF 3107610..3108815 (-) 1206 WP_106985524.1 type II secretion system inner membrane protein GspF -
  C9E88_RS14635 (C9E88_005755) priA 3108967..3111189 (+) 2223 WP_106985525.1 primosomal protein N' Machinery gene
  C9E88_RS14640 (C9E88_005750) - 3111250..3113103 (+) 1854 WP_106985526.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  C9E88_RS14645 (C9E88_005745) - 3113154..3114029 (+) 876 WP_106985527.1 Hsp33 family molecular chaperone HslO -
  C9E88_RS14650 (C9E88_005740) - 3114296..3114751 (+) 456 WP_106985528.1 DUF2147 domain-containing protein -
  C9E88_RS14655 (C9E88_005735) - 3115056..3115520 (+) 465 WP_106985529.1 DUF2147 domain-containing protein -
  C9E88_RS14660 (C9E88_005730) - 3115701..3116159 (+) 459 WP_106985530.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83898.96 Da        Isoelectric Point: 8.5087

>NTDB_id=345171 C9E88_RS14635 WP_106985525.1 3108967..3111189(+) (priA) [Acinetobacter cumulans strain WCHAc060092]
MQVSDLAPAPIFRVRVAVPVHLYDCFDYSLSAELYQRAEVGTRVAVSFGRQNLVGVIMEKLAPDVPLNPDIKLKAITELL
DERAILNTQSLSLLTWAAQYYQFPIGEVVHSALPTLLRQGKPYNLLARTWKLLDAEAEQKVKRSERQQEAYKILKLHPAG
TSENVLNLAGVETATLKALEKKQICRCELEAQDFSPMPIQMAQMPLTANPEQQHAIDSILKARKKYQAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIVLLHSGLNDSKRLQAWQAAETGKASIILGTRSAIFSPL
PNLGLIVLDEEHDLSFKQQEGFRYHARDVALYRGYLEQCPVVLGSATPSIESYALVQHQKMQCLELNQRAGTALMPKIHI
LDLKIAKKQHGMSQALLDEMKKRLDKNEQVLVFLNRRGYAPVLICESCAWQAKCPHCDANFTVHRTPYQHLHCHHCGTIH
RMPDHCPQCAHTELKPLGLGTAKVEEHLNELFPDYDVIRVDRDSTSRVGSWQKIYDKIQQSQASILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLVVQVAGRAGRGERKGDVYLQTLRPDHPLLNTLVKEDYRQFAKQTLQEREAALM
PPFRYAALIRCESKNQELNKEFLQHHAALLRQSAELNVDIWGPIPAPMERKAGRYQSHMVLLSPDRARLHFYIRNWWQNM
LHQKPSSMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=345171 C9E88_RS14635 WP_106985525.1 3108967..3111189(+) (priA) [Acinetobacter cumulans strain WCHAc060092]
ATGCAAGTTTCAGATCTCGCCCCCGCCCCTATCTTTCGTGTCCGTGTGGCCGTCCCTGTACATTTATATGACTGTTTTGA
TTACAGTCTAAGTGCAGAACTTTATCAACGCGCTGAAGTTGGCACGCGGGTTGCAGTGTCTTTTGGTCGGCAAAATCTGG
TCGGCGTGATTATGGAAAAGCTCGCACCTGATGTGCCACTCAATCCAGATATCAAGCTCAAAGCCATTACAGAACTACTT
GATGAACGCGCTATTTTAAATACCCAAAGTTTAAGTTTATTGACTTGGGCTGCGCAGTATTATCAATTCCCCATTGGCGA
AGTGGTTCATAGTGCTCTTCCTACACTACTGCGCCAAGGTAAACCCTATAACTTGCTGGCACGGACATGGAAACTGTTAG
ATGCCGAAGCCGAACAAAAAGTAAAACGCTCTGAACGCCAGCAAGAAGCTTATAAAATCTTAAAACTACATCCTGCTGGC
ACATCCGAAAATGTGCTGAATTTAGCGGGTGTAGAAACTGCAACACTCAAAGCTTTAGAAAAAAAACAAATTTGTCGTTG
CGAGTTAGAGGCGCAAGATTTTAGCCCAATGCCGATTCAAATGGCGCAAATGCCTCTGACGGCCAATCCAGAACAGCAGC
ATGCGATTGATAGCATTCTGAAGGCCCGCAAAAAATATCAAGCTTTTTTACTCGATGGCCTCACAGGTAGTGGTAAAACT
GAAGTGTATTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTACTGGTCTTGGTACCCGAAATTGGTCTGAC
ACCACAAACCATTAGCCGTTTTCAGTCGCGCTTTCATTGCAATATTGTCTTGTTACATTCAGGCCTCAACGACAGTAAAC
GCTTACAAGCATGGCAGGCTGCCGAAACAGGCAAAGCCTCGATTATCTTAGGTACGCGCTCAGCCATTTTTAGCCCACTC
CCTAACTTAGGTCTGATCGTGCTCGACGAAGAACATGATTTGTCTTTTAAGCAACAAGAAGGCTTTCGTTATCATGCTCG
AGATGTAGCATTATATCGTGGCTATTTAGAGCAATGCCCTGTGGTGCTCGGCTCTGCCACGCCAAGTATTGAAAGCTATG
CATTGGTGCAACATCAAAAGATGCAATGCTTGGAACTCAACCAGCGTGCAGGCACGGCACTCATGCCTAAAATCCACATT
TTGGATTTAAAAATTGCCAAGAAGCAACATGGCATGAGTCAAGCTTTGCTCGATGAGATGAAAAAACGCCTCGATAAAAA
TGAGCAAGTCTTGGTGTTTTTAAACCGCCGTGGTTATGCGCCTGTGCTGATCTGTGAAAGCTGTGCATGGCAGGCCAAAT
GCCCACATTGTGATGCCAATTTTACCGTGCATCGTACTCCTTATCAGCATTTGCATTGCCATCACTGTGGTACGATTCAT
CGCATGCCTGACCACTGCCCACAGTGTGCACATACAGAACTTAAACCTTTGGGCTTAGGCACTGCCAAAGTTGAAGAACA
TTTAAATGAGCTATTTCCTGATTATGACGTCATTCGGGTCGATCGAGACTCCACCAGTCGCGTAGGTAGCTGGCAAAAAA
TTTATGACAAAATTCAGCAAAGCCAAGCATCTATTTTATTGGGTACACAAATGCTGGCCAAAGGTCATCATTTTCCTTAT
GTGACCCTTGTGGCTATTTTAGATATCGACTCAGGCTTATTGAGCGTCGATTTTCGGGCAACTGAGCGCACTGCTCAATT
GGTCGTACAAGTAGCTGGGCGTGCTGGTCGTGGCGAGCGTAAAGGGGATGTATATTTACAAACCTTAAGACCTGATCACC
CCCTATTAAACACCTTGGTCAAAGAAGACTACCGCCAGTTTGCCAAACAAACTTTACAAGAACGTGAAGCAGCACTCATG
CCTCCATTTCGCTATGCAGCGCTGATCCGCTGCGAATCGAAAAATCAGGAGCTAAATAAAGAATTTTTACAGCATCATGC
TGCCCTGCTACGTCAAAGCGCGGAACTGAATGTAGACATTTGGGGCCCTATTCCAGCGCCTATGGAACGTAAAGCAGGCC
GCTATCAATCACACATGGTGTTATTGTCACCAGATCGCGCCCGATTACATTTTTATATCCGAAATTGGTGGCAAAATATG
TTGCATCAAAAGCCTTCTAGCATGAAATTAACCCTAGATATTGACCCACAAGAACTCAGTTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

70.405

100

0.704

Multiple sequence alignment