Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GFB63_RS00160 Genome accession   NZ_CP045596
Coordinates   31670..33340 (-) Length   556 a.a.
NCBI ID   WP_100262520.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26670..38340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS00125 (GFB63_00135) - 26711..27403 (-) 693 WP_011226119.1 phosphoglycerate mutase -
  GFB63_RS00130 (GFB63_00140) - 27658..28596 (+) 939 WP_002950994.1 dihydroorotate oxidase -
  GFB63_RS00135 (GFB63_00145) - 28661..28861 (-) 201 WP_011681249.1 hypothetical protein -
  GFB63_RS00140 (GFB63_00150) - 28920..29195 (-) 276 WP_002950996.1 HU family DNA-binding protein -
  GFB63_RS00145 (GFB63_00155) - 29332..29901 (-) 570 WP_111679626.1 YpmS family protein -
  GFB63_RS00150 (GFB63_00160) - 29894..30770 (-) 877 Protein_32 SGNH/GDSL hydrolase family protein -
  GFB63_RS00155 (GFB63_00165) - 30763..31599 (-) 837 WP_100262519.1 DegV family protein -
  GFB63_RS00160 (GFB63_00170) recN 31670..33340 (-) 1671 WP_100262520.1 DNA repair protein RecN Machinery gene
  GFB63_RS00165 (GFB63_00175) - 33349..33795 (-) 447 WP_011681252.1 arginine repressor -
  GFB63_RS00170 (GFB63_00180) - 33743..34609 (-) 867 WP_082308995.1 TlyA family RNA methyltransferase -
  GFB63_RS00175 (GFB63_00185) - 34602..35474 (-) 873 WP_022096738.1 polyprenyl synthetase family protein -
  GFB63_RS00180 (GFB63_00190) - 35474..35689 (-) 216 WP_002951008.1 exodeoxyribonuclease VII small subunit -
  GFB63_RS00185 (GFB63_00195) xseA 35667..37007 (-) 1341 WP_193838305.1 exodeoxyribonuclease VII large subunit -
  GFB63_RS10300 - 37196..37729 (-) 534 WP_223899692.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62472.64 Da        Isoelectric Point: 4.5445

>NTDB_id=345167 GFB63_RS00160 WP_100262520.1 31670..33340(-) (recN) [Streptococcus thermophilus strain TK-P3A]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSAPKAEIQGFFSIEQNPALVSLL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTILKAVGNFLVDIHGQHDQEELMRPALHISMLDAFGDKDFFQAKKE
YQEYFDRYRELRKAVLEKQKNEKEHKARIEMLAFQIAEIEAASLKTGEDLALMKERDKLLNHKQIADTLTNAYVMLDNEN
FSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEAYYVLEDVTKQLGDLVDNLDFDAGRLQEIEYRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQRERHQIANALESEIKTELCDLYMDKADFKVVFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVEEIAKMLAGDNLTDAALSQARALLKVDEPV

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=345167 GFB63_RS00160 WP_100262520.1 31670..33340(-) (recN) [Streptococcus thermophilus strain TK-P3A]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAAATTTCTCTTAACTTTGAAAATGGGATGACTGTTCT
TACCGGAGAGACTGGGGCAGGAAAATCCATTATCATTGATGCCATGAATCTTATGTTGGGGGCACGGGCATCTAGCGAAG
TTGTCCGTCATTCAGCCCCCAAGGCGGAGATTCAGGGCTTCTTTTCAATTGAACAAAATCCTGCTTTAGTTAGTCTCTTG
GAAGACAATGGGATTCCTGTTGAAGATGAGTTAATTATCCGCCGTGAAATTTTCCAAAATGGTCGAAGTGTTAGCCGTAT
CAACGGTCAAATGGTCAATTTAACGATTCTTAAAGCTGTCGGAAACTTTTTGGTAGATATCCATGGACAGCATGACCAAG
AAGAACTTATGAGACCTGCTCTTCACATAAGCATGCTTGATGCCTTTGGTGACAAGGATTTTTTTCAGGCAAAAAAAGAA
TATCAGGAATACTTTGATCGTTACCGTGAGCTAAGAAAAGCTGTTCTTGAAAAACAGAAAAACGAGAAAGAGCATAAGGC
TAGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGCCTCTCTAAAAACAGGTGAGGATCTAGCTTTGATGA
AGGAGCGAGATAAACTCCTCAATCATAAGCAGATTGCTGATACCTTAACGAATGCTTATGTTATGCTGGATAATGAAAAT
TTTTCAAGCTTATCAAATGTCCGTTCTGCCATGAATGATCTCCAATCTCTTGAAGAGTATGATTCTGATTATAAAGAACT
CTCAAATAATTTGTCAGAAGCCTACTATGTCCTTGAGGATGTCACTAAACAGTTAGGAGATCTTGTAGATAATTTAGATT
TTGATGCTGGGCGTTTGCAAGAGATTGAATACCGTTTAGATACGATTAATGCCATTACCCGTAAATATGGTGGAACTGTT
GATGATGTCTTAGATTATCTCGAAAATTCAAGTAAAGAATACAACCTATTGACTGGAAATTCTAGCTCTTCTGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGACTTACTCGCGTCTGCAGAAACCTTGCAAAGGGAACGACATCAGATTGCAA
ACGCTCTTGAGTCAGAGATAAAGACTGAGTTATGTGATCTGTATATGGATAAGGCTGATTTTAAAGTTGTCTTTACTAAG
GGGAAATTTAACCGTGATGGTAATGAGCAAGTTGAGTTTTATATTTCAACCAATCCAGGTGAAGGATTTAAACCGCTTGT
TAAGGTTGCATCTGGTGGCGAACTGTCTCGACTTATGCTAGCCATTAAGTCAGCCTTTGCTCGAAAAGAAGATAAAACTA
GTATTGTCTTTGATGAGGTTGATACTGGAGTGTCGGGCCGCGTAGCCCAGGCTATCGCACAAAAGATTCATAAGATTGGA
AGTCATGGTCAGGTATTGGCTATCAGTCACCTTCCTCAAGTAATCGCTATTGCAGATTATCAATTCTTTATTTCTAAAGA
AAGTGATAACGAGACAACTGTATCTCGTGTTCGTCTCCTAACACCTGAAGAAAGAGTTGAGGAAATCGCCAAGATGCTTG
CAGGTGATAATTTGACTGATGCTGCCTTGAGTCAAGCTAGAGCTTTATTAAAAGTGGATGAACCTGTTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.45

Multiple sequence alignment