Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HIB_RS02280 Genome accession   NC_016809
Coordinates   441429..442043 (-) Length   204 a.a.
NCBI ID   WP_005659994.1    Uniprot ID   -
Organism   Haemophilus influenzae 10810     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 436429..447043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS02255 (HIB_04260) proC 436997..437812 (+) 816 WP_015701566.1 pyrroline-5-carboxylate reductase -
  HIB_RS02260 (HIB_04270) - 437812..438978 (+) 1167 WP_015701567.1 3-phenylpropionate MFS transporter -
  HIB_RS02265 (HIB_04280) xerD 439009..439902 (+) 894 WP_005636429.1 site-specific tyrosine recombinase XerD -
  HIB_RS02270 (HIB_04290) - 440075..440362 (+) 288 WP_005659998.1 DUF5339 domain-containing protein -
  HIB_RS02275 (HIB_04300) ruvB 440414..441421 (-) 1008 WP_015701568.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HIB_RS02280 (HIB_04310) ruvA 441429..442043 (-) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  HIB_RS02285 (HIB_04320) ruvC 442106..442678 (-) 573 WP_015701569.1 crossover junction endodeoxyribonuclease RuvC -
  HIB_RS02290 (HIB_04330) - 442725..443465 (-) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  HIB_RS02295 (HIB_04340) nudB 443477..443950 (-) 474 WP_015701570.1 dihydroneopterin triphosphate diphosphatase -
  HIB_RS02300 (HIB_04350) aspS 443972..445738 (-) 1767 WP_015701571.1 aspartate--tRNA ligase -
  HIB_RS02305 (HIB_04360) - 445957..446475 (+) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22547.27 Da        Isoelectric Point: 6.5030

>NTDB_id=34515 HIB_RS02280 WP_005659994.1 441429..442043(-) (ruvA) [Haemophilus influenzae 10810]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=34515 HIB_RS02280 WP_005659994.1 441429..442043(-) (ruvA) [Haemophilus influenzae 10810]
ATGATTGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTTGGGCCTAAATTAGCCCTAGCGATTTTATCTGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment