Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HIB_RS02275 Genome accession   NC_016809
Coordinates   440414..441421 (-) Length   335 a.a.
NCBI ID   WP_015701568.1    Uniprot ID   -
Organism   Haemophilus influenzae 10810     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 435414..446421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS02245 (HIB_04240) ruvX 435554..435973 (+) 420 WP_005648994.1 Holliday junction resolvase RuvX -
  HIB_RS02250 (HIB_04250) rdgC 436023..436931 (-) 909 WP_015701565.1 recombination-associated protein RdgC -
  HIB_RS02255 (HIB_04260) proC 436997..437812 (+) 816 WP_015701566.1 pyrroline-5-carboxylate reductase -
  HIB_RS02260 (HIB_04270) - 437812..438978 (+) 1167 WP_015701567.1 3-phenylpropionate MFS transporter -
  HIB_RS02265 (HIB_04280) xerD 439009..439902 (+) 894 WP_005636429.1 site-specific tyrosine recombinase XerD -
  HIB_RS02270 (HIB_04290) - 440075..440362 (+) 288 WP_005659998.1 DUF5339 domain-containing protein -
  HIB_RS02275 (HIB_04300) ruvB 440414..441421 (-) 1008 WP_015701568.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HIB_RS02280 (HIB_04310) ruvA 441429..442043 (-) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  HIB_RS02285 (HIB_04320) ruvC 442106..442678 (-) 573 WP_015701569.1 crossover junction endodeoxyribonuclease RuvC -
  HIB_RS02290 (HIB_04330) - 442725..443465 (-) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  HIB_RS02295 (HIB_04340) nudB 443477..443950 (-) 474 WP_015701570.1 dihydroneopterin triphosphate diphosphatase -
  HIB_RS02300 (HIB_04350) aspS 443972..445738 (-) 1767 WP_015701571.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37120.47 Da        Isoelectric Point: 4.7793

>NTDB_id=34514 HIB_RS02275 WP_015701568.1 440414..441421(-) (ruvB) [Haemophilus influenzae 10810]
MIEADRIISSQAKIDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=34514 HIB_RS02275 WP_015701568.1 440414..441421(-) (ruvB) [Haemophilus influenzae 10810]
ATGATTGAAGCAGATAGAATTATTAGCAGTCAGGCAAAGATTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTGTTAGAAAAAGCGGGCGATTTGGCTGCAATGCTAACCAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGCGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACTCCTAGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGAGGCCCTGTGGGACTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGTCGTATTGCA
ACATCGCAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.691

97.612

0.612
  ruvB Streptococcus pneumoniae TIGR4

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae R6

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae D39

57.975

97.313

0.564
  ruvB Helicobacter pylori 26695

54.633

93.433

0.51
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507

Multiple sequence alignment