Detailed information NTG0345129

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GE296_RS02950
• Genome accession: NZ_CP045564
• Coordinates: 621829..623001 (+)
• Length: 390 a.a.
• NCBI ID: WP_004916965.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain RA-LZ01
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 616829..628001

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE296_RS02920	folK	617590..618039 (-)	450	WP_004916980.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
GE296_RS02925	sppA	618061..619815 (+)	1755	WP_004916979.1	signal peptide peptidase SppA	-
GE296_RS02930	dtd	619900..620346 (-)	447	WP_004916976.1	D-aminoacyl-tRNA deacylase	-
GE296_RS02935	-	620352..620816 (-)	465	WP_004916974.1	hypothetical protein	-
GE296_RS02940	greA	620919..621386 (+)	468	WP_004916971.1	transcription elongation factor GreA	-
GE296_RS02945	-	621405..621791 (+)	387	WP_004916969.1	HIT family protein	-
GE296_RS02950	clpX	621829..623001 (+)	1173	WP_004916965.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
GE296_RS02955	-	623085..623450 (+)	366	WP_004916962.1	hypothetical protein	-
GE296_RS02960	-	623498..625039 (+)	1542	WP_004916959.1	T9SS type A sorting domain-containing protein	-
GE296_RS02965	-	625051..625302 (+)	252	WP_004916956.1	hypothetical protein	-
GE296_RS02970	-	625364..626635 (+)	1272	WP_228481888.1	peroxiredoxin	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43885.55 Da
• Isoelectric Point: 6.2755

>NTDB_id=345129 GE296_RS02950 WP_004916965.1 621829..623001(+) (clpX) [Riemerella anatipestifer strain RA-LZ01]
MNNNQCSFCGRHRKEVQMLVSGQNGLICEHCIEQAHAFVKDNIQKEEFSPISTLSELKKPREIKKTLDEYVIGQDQAKKQ
LSIAVYNHYKRLLHSSTKKDNDVEIEKSNIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRL
LMVADYDVEKAEKGIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQVNTQNILF
IAGGAFDGIKEIIERRLNKQAIGFSKEKLDSEKDLAQILPQVNSTDLRKFGLIPELLGRFPVITYLDQLTKKTMVRIMKE
PKNSIVNQFKALFKIDGIDLEFTDEALEKIVDETFEKGLGARGLRGTTEKVLEDYMFDIDIISKNKITIN

Nucleotide

• Length: 1173 bp

>NTDB_id=345129 GE296_RS02950 WP_004916965.1 621829..623001(+) (clpX) [Riemerella anatipestifer strain RA-LZ01]
ATGAATAATAACCAGTGTTCTTTTTGCGGAAGACATCGTAAAGAAGTTCAAATGTTAGTTTCGGGACAAAACGGACTTAT
CTGCGAACATTGTATAGAACAAGCTCACGCATTTGTTAAAGACAATATTCAGAAAGAAGAATTCTCTCCTATAAGTACCC
TCTCCGAACTAAAGAAACCTAGAGAAATTAAAAAAACTCTAGACGAATATGTCATCGGACAAGACCAAGCTAAAAAACAA
CTTTCCATCGCAGTCTATAACCATTATAAAAGACTTCTTCACTCTTCAACAAAAAAAGACAATGATGTTGAAATAGAAAA
ATCTAACATCATTATGATAGGTGAAACAGGCACAGGAAAAACCCTTTTAGCGAAAACCATTGCAAGAGAACTTAATGTCC
CTTTTTGTATTGTAGACGCTACTATACTTACCGAAGCTGGTTATGTAGGCGAAGATGTAGAGAGTATTTTATCTAGACTT
CTTATGGTCGCTGATTACGATGTAGAGAAAGCCGAAAAAGGCATTGTATTCATAGATGAAATAGATAAAATAGCGAGAAA
ATCAGATAATCCAAGCATCACAAGAGATGTATCAGGAGAAGGTGTACAACAAGGATTATTAAAGTTATTGGAAGGAAGCA
TTGTAAATGTACCGCCTCAAGGAGGAAGAAAACACCCTGACCAAAAATACATACAAGTAAACACACAAAATATCCTATTC
ATTGCTGGAGGGGCTTTTGATGGTATAAAAGAAATTATAGAAAGGAGACTAAACAAACAAGCCATAGGCTTTAGTAAAGA
AAAACTAGATTCCGAAAAAGATTTGGCACAGATATTGCCACAAGTAAACTCAACGGATTTGAGAAAGTTCGGATTAATTC
CAGAACTTTTAGGTAGATTCCCTGTAATTACTTATTTAGACCAACTAACCAAAAAGACCATGGTAAGAATAATGAAAGAG
CCAAAAAACTCTATTGTTAATCAATTCAAAGCTCTTTTCAAAATAGACGGTATAGATTTAGAGTTCACAGACGAAGCCTT
AGAGAAAATTGTAGATGAAACTTTTGAAAAAGGATTAGGTGCAAGAGGACTTAGAGGCACTACAGAAAAGGTTTTAGAAG
ATTACATGTTTGATATAGATATAATATCCAAGAATAAAATTACAATAAATTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (5-40)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (309-378)

• AAA domain (Cdc48 subfamily) (AAA_2) (106-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	52.785	96.667	0.51
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.715	97.179	0.503