Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GE296_RS01000 Genome accession   NZ_CP045564
Coordinates   219544..220152 (+) Length   202 a.a.
NCBI ID   WP_004919077.1    Uniprot ID   E4T8W1
Organism   Riemerella anatipestifer strain RA-LZ01     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 214544..225152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE296_RS10400 - 214797..215549 (+) 753 WP_260393665.1 S8 family serine peptidase -
  GE296_RS00995 - 215443..219231 (+) 3789 WP_148225515.1 S8 family serine peptidase -
  GE296_RS01000 recR 219544..220152 (+) 609 WP_004919077.1 recombination mediator RecR Machinery gene
  GE296_RS01005 - 220159..221016 (+) 858 WP_004919075.1 glycosyltransferase family 2 protein -
  GE296_RS01010 secG 221055..221417 (-) 363 WP_004919074.1 preprotein translocase subunit SecG -
  GE296_RS01015 - 221560..223602 (-) 2043 WP_004919073.1 pitrilysin family protein -
  GE296_RS01020 - 223615..224928 (-) 1314 WP_004919072.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22424.76 Da        Isoelectric Point: 4.9891

>NTDB_id=345119 GE296_RS01000 WP_004919077.1 219544..220152(+) (recR) [Riemerella anatipestifer strain RA-LZ01]
MNFPSKVLEKAVEEISGLPGIGRKSALRLALHLLRQPSSQGLALGDAIQNLVTEIKYCKECHNFSDTDICEICADDSRHA
ELLCVVEDVRDVMAIENTGKFKGKYLVLGGKISPMEGIGPQQLNIETLESKLEIGEIEEVIFALSATMEGDTTVYYLYKK
FKHFDIKFSNIARGISVGDELEYADEVSLGRSILNRIPYKGH

Nucleotide


Download         Length: 609 bp        

>NTDB_id=345119 GE296_RS01000 WP_004919077.1 219544..220152(+) (recR) [Riemerella anatipestifer strain RA-LZ01]
ATGAATTTTCCAAGTAAGGTTTTAGAAAAAGCAGTAGAAGAAATATCAGGTCTCCCAGGGATAGGCAGAAAGTCGGCTCT
CAGACTAGCGCTTCATTTGCTTAGACAACCGAGTTCACAAGGATTAGCTCTAGGCGATGCTATACAAAATCTAGTTACAG
AGATAAAATATTGTAAAGAATGCCATAACTTTTCGGACACAGATATTTGCGAAATTTGTGCAGATGACAGTAGACACGCT
GAACTCCTATGCGTTGTGGAAGATGTGAGAGATGTAATGGCGATAGAAAACACAGGAAAATTCAAAGGAAAATATTTGGT
TTTAGGAGGAAAAATATCGCCTATGGAAGGTATTGGACCTCAACAATTAAATATAGAAACTTTAGAAAGCAAACTAGAAA
TAGGGGAGATAGAGGAGGTTATTTTTGCACTATCTGCCACTATGGAGGGCGATACCACCGTGTATTATTTGTATAAAAAG
TTTAAGCATTTTGACATTAAATTCTCCAATATTGCGAGAGGGATTTCCGTAGGAGATGAACTAGAGTACGCCGATGAAGT
TTCTTTGGGGAGGTCTATTTTGAACCGAATACCTTATAAAGGTCATTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-171)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4T8W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.837

97.03

0.406
  recR Streptococcus pneumoniae R6

40.306

97.03

0.391
  recR Bacillus subtilis subsp. subtilis str. 168

39.286

97.03

0.381