Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   CCO2228_RS06335 Genome accession   NZ_CP035927
Coordinates   1240496..1241146 (+) Length   216 a.a.
NCBI ID   WP_002777555.1    Uniprot ID   -
Organism   Campylobacter coli strain RM2228     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1235496..1246146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCO2228_RS06315 (CCO2228_1232) - 1236352..1237806 (-) 1455 WP_002777547.1 MotA/TolQ/ExbB proton channel family protein -
  CCO2228_RS06320 (CCO2228_1233) fbaA 1237905..1238969 (-) 1065 WP_002777549.1 class II fructose-bisphosphate aldolase -
  CCO2228_RS06325 (CCO2228_1234) - 1238969..1239790 (-) 822 WP_002777551.1 peptidylprolyl isomerase -
  CCO2228_RS06330 (CCO2228_1235) nth 1239873..1240499 (+) 627 WP_002777553.1 endonuclease III -
  CCO2228_RS06335 (CCO2228_1236) CJE1441 1240496..1241146 (+) 651 WP_002777555.1 DNA/RNA non-specific endonuclease Regulator
  CCO2228_RS06340 (CCO2228_1237) - 1241156..1241788 (+) 633 WP_002780167.1 trimeric intracellular cation channel family protein -
  CCO2228_RS06345 (CCO2228_1238) - 1241867..1242085 (+) 219 WP_002777559.1 EexN family lipoprotein -
  CCO2228_RS06350 (CCO2228_1239) cmoA 1242089..1242793 (-) 705 WP_002777561.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  CCO2228_RS06355 (CCO2228_1240) - 1242797..1243633 (-) 837 WP_002780161.1 bifunctional riboflavin kinase/FAD synthetase -
  CCO2228_RS06360 (CCO2228_1241) - 1243602..1244351 (-) 750 WP_002777566.1 TlyA family RNA methyltransferase -
  CCO2228_RS06365 (CCO2228_1242) - 1244348..1245352 (-) 1005 WP_002786117.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25110.79 Da        Isoelectric Point: 9.7703

>NTDB_id=345089 CCO2228_RS06335 WP_002777555.1 1240496..1241146(+) (CJE1441) [Campylobacter coli strain RM2228]
MKLIIFLLTFTLHVFALEAYKPDKDFAPYFNPLNCSVVLDKFFYTNCYDYKLKGTKAVAYKVEASNLKEKQIKKRARFED
DTNIPKKYRSTWSDYKNSGYTRGHIASNASFRFSKAAQTSVFLMSNITPQNAQVNATVWNEIEQRERSLAFKFQSVEVLN
LILYGKNPKFIKNGIAIPSSYVKIIKTSRFEECYEVPNNNIQSEEINDYKISCNKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=345089 CCO2228_RS06335 WP_002777555.1 1240496..1241146(+) (CJE1441) [Campylobacter coli strain RM2228]
ATGAAACTTATCATCTTTTTATTAACATTTACACTTCATGTTTTTGCTTTAGAAGCTTATAAGCCCGATAAAGATTTTGC
GCCTTATTTTAATCCTTTAAATTGCTCTGTTGTTTTGGATAAATTTTTTTATACCAATTGTTATGATTATAAACTCAAAG
GCACTAAAGCCGTAGCCTATAAAGTCGAAGCGTCCAATCTAAAAGAAAAACAGATCAAAAAACGAGCTCGCTTTGAAGAT
GACACAAATATCCCTAAAAAATACCGCAGTACTTGGAGTGATTATAAAAATAGTGGTTATACCCGAGGACATATAGCCTC
AAATGCTTCTTTTCGCTTTAGTAAAGCAGCACAAACATCGGTTTTTTTGATGAGTAATATCACTCCACAAAATGCACAAG
TTAATGCAACGGTTTGGAATGAAATCGAACAAAGAGAAAGAAGTCTTGCTTTTAAATTCCAAAGCGTTGAAGTGCTAAAT
CTAATACTTTATGGTAAAAATCCTAAATTTATTAAAAATGGCATTGCTATACCGAGTTCTTATGTTAAGATTATCAAAAC
TTCTCGGTTTGAAGAATGTTATGAAGTACCCAATAACAATATCCAGAGCGAAGAAATCAATGATTATAAAATTTCTTGCA
ATAAATTCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(35-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

66.497

91.204

0.606
  CJE0566 Campylobacter jejuni RM1221

65.99

91.204

0.602

Multiple sequence alignment