Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | CCO2228_RS05345 | Genome accession | NZ_CP035927 |
| Coordinates | 1047218..1047523 (+) | Length | 101 a.a. |
| NCBI ID | WP_002777852.1 | Uniprot ID | A0A3Z9CUC7 |
| Organism | Campylobacter coli strain RM2228 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1042218..1052523
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO2228_RS05320 (CCO2228_1040) | rpsR | 1042577..1042837 (+) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
| CCO2228_RS05325 (CCO2228_1041) | lon | 1042893..1045268 (-) | 2376 | WP_002777089.1 | endopeptidase La | - |
| CCO2228_RS05330 (CCO2228_1042) | - | 1045284..1045931 (-) | 648 | WP_002777091.1 | outer membrane protein assembly factor BamD | - |
| CCO2228_RS05335 (CCO2228_1043) | fliW | 1046095..1046484 (+) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| CCO2228_RS05340 (CCO2228_1044) | proC | 1046484..1047221 (+) | 738 | WP_002787902.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| CCO2228_RS05345 (CCO2228_1045) | ctsT | 1047218..1047523 (+) | 306 | WP_002777852.1 | hypothetical protein | Machinery gene |
| CCO2228_RS05350 (CCO2228_1046) | - | 1047516..1048184 (+) | 669 | WP_002777103.1 | hypothetical protein | - |
| CCO2228_RS05355 (CCO2228_1047) | - | 1048181..1048633 (+) | 453 | WP_002777117.1 | hypothetical protein | - |
| CCO2228_RS05360 (CCO2228_1048) | - | 1048626..1049255 (-) | 630 | WP_002777119.1 | uroporphyrinogen-III synthase | - |
| CCO2228_RS05365 (CCO2228_1049) | thiE | 1049233..1049865 (-) | 633 | WP_002777120.1 | thiamine phosphate synthase | - |
| CCO2228_RS05370 (CCO2228_1050) | thiD | 1049855..1050667 (-) | 813 | WP_002777122.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| CCO2228_RS05375 (CCO2228_1051) | - | 1050667..1051350 (-) | 684 | WP_002777124.1 | 3-methyladenine DNA glycosylase | - |
| CCO2228_RS05380 (CCO2228_1052) | - | 1051347..1052108 (-) | 762 | WP_025431509.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12396.25 Da Isoelectric Point: 6.0617
>NTDB_id=345083 CCO2228_RS05345 WP_002777852.1 1047218..1047523(+) (ctsT) [Campylobacter coli strain RM2228]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=345083 CCO2228_RS05345 WP_002777852.1 1047218..1047523(+) (ctsT) [Campylobacter coli strain RM2228]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
50 |
97.03 |
0.485 |