Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GD578_RS09140 Genome accession   NZ_CP045560
Coordinates   1869278..1869874 (+) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter nosocomialis strain AC1530     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864278..1874874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS09110 (GD578_09215) - 1864354..1864728 (+) 375 WP_002050056.1 TonB C-terminal domain-containing protein -
  GD578_RS09115 (GD578_09220) - 1864970..1865737 (+) 768 WP_002050163.1 class I SAM-dependent methyltransferase -
  GD578_RS09120 (GD578_09225) - 1865860..1866945 (-) 1086 WP_002050091.1 alpha/beta fold hydrolase -
  GD578_RS09125 (GD578_09230) - 1867080..1868267 (+) 1188 WP_004887364.1 O-succinylhomoserine sulfhydrylase -
  GD578_RS09130 (GD578_09235) - 1868446..1868682 (+) 237 WP_002050238.1 hypothetical protein -
  GD578_RS09135 (GD578_09240) - 1868939..1869268 (+) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  GD578_RS09140 (GD578_09245) recR 1869278..1869874 (+) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  GD578_RS09145 (GD578_09250) - 1870182..1871306 (+) 1125 WP_002049871.1 HRDC domain-containing protein -
  GD578_RS09150 (GD578_09255) - 1871803..1872069 (+) 267 WP_002050225.1 hypothetical protein -
  GD578_RS09155 (GD578_09260) - 1872199..1872540 (+) 342 WP_025467823.1 hypothetical protein -
  GD578_RS09160 (GD578_09265) - 1872614..1872778 (-) 165 WP_000086293.1 hypothetical protein -
  GD578_RS09165 (GD578_09270) - 1873219..1873524 (+) 306 WP_002049830.1 YcgL domain-containing protein -
  GD578_RS09170 (GD578_09275) - 1873517..1873903 (+) 387 WP_002050047.1 hypothetical protein -
  GD578_RS09175 (GD578_09280) - 1873933..1874784 (+) 852 WP_002049937.1 MoxR family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=345082 GD578_RS09140 WP_000490551.1 1869278..1869874(+) (recR) [Acinetobacter nosocomialis strain AC1530]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=345082 GD578_RS09140 WP_000490551.1 1869278..1869874(+) (recR) [Acinetobacter nosocomialis strain AC1530]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCTCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCGCATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACTGAGCACGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAACTG
CTATGTGTGGTTGAATCTCCGGCAGATGTTATGGCAATTGAACAAAGTGGTAGTTTCCGTGGTAAATACCATGTATTGGG
TGGGCATCTTTCTCCATTAGATGGGATTGGGCCAGAGGAAATAGGTATTCCTTACCTAATTCAACGCTTAAGCCAAGGCA
CTATCGAAGAAGTCATTTTGGCAACTAACGCCACTGTAGAAGGTCAGGCGACAGCGCACTATTTGGTTGAAGCGACGAAA
CATTTACCTATTCATATGACACGTATTGCTCAAGGTGTACCTCAAGGTGGTGAGCTTGAATATGTTGATAGTCATACATT
AAGTCAAGCGGTGCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424

Multiple sequence alignment