Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   Len3610_RS02350 Genome accession   NZ_CP035925
Coordinates   452420..454234 (+) Length   604 a.a.
NCBI ID   WP_176446541.1    Uniprot ID   A0A7H8S3N6
Organism   Lentibacillus sp. CBA3610     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 447420..459234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Len3610_RS02330 (Len3610_02325) - 448583..449170 (+) 588 WP_176446537.1 N-acetyltransferase -
  Len3610_RS02335 (Len3610_02330) spxA 449458..449853 (+) 396 WP_176446538.1 transcriptional regulator SpxA -
  Len3610_RS02340 (Len3610_02335) mecA 450377..451063 (+) 687 WP_176446539.1 adaptor protein MecA -
  Len3610_RS02345 (Len3610_02340) - 451148..452338 (+) 1191 WP_176446540.1 competence protein CoiA -
  Len3610_RS02350 (Len3610_02345) pepF 452420..454234 (+) 1815 WP_176446541.1 oligoendopeptidase F Regulator
  Len3610_RS02355 (Len3610_02350) - 456033..456929 (-) 897 WP_176446542.1 ClpXP adapter SpxH family protein -
  Len3610_RS02360 (Len3610_02355) - 457041..457424 (-) 384 WP_176446543.1 globin -
  Len3610_RS02365 (Len3610_02360) - 457506..458078 (-) 573 WP_176446544.1 CYTH domain-containing protein -
  Len3610_RS02370 (Len3610_02365) - 458329..458934 (+) 606 WP_176446545.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69282.24 Da        Isoelectric Point: 4.5519

>NTDB_id=345037 Len3610_RS02350 WP_176446541.1 452420..454234(+) (pepF) [Lentibacillus sp. CBA3610]
MAKATKELPKRSEIPEERKWKLDDIFATDEDWEQELKSLQNDLPAIEKFQGKLADSAQNLYDALQLQDELSERLGKLFTY
AHMRSDQDTTNSTYQAMDAKAENVLTVASSTMSFIVPEILAMDESKLQNFLEEHEDLKFYEHVLDEISRQRPHVLSEKEE
ALLAEASEPMSSASNTFGMLNNADLTFPSIKNENGEEVDLTHGRYIGFMQSTDRNVRKAAFKAMYETYGKFINTFASTLA
GTVKADNFDAKVHHYDSARQAALDSNNIPEEVYDNLVEAVNERLPLLHRYQRLRKQVLAVDELHMYDVYAPLVENADMTF
SYEEAQKYVLEGLKPLGDDYVNVLKEGFGSRWIDVEESKGKRSGAYSSGAYGTHPYILLNWQDKLDDLFTLAHELGHSLH
SYYTHKHQQFRYGNYSIFVAEVASTTNEALLNDYLLNNVDDEKEKLYLLNHFLEGFRGTVFRQTMFAEFEHEIHKRAQNG
EALTAENLTAIYHDLNKKYYGDDVVSDDEIGKEWARIPHFYMNYYVYQYATGYSAATTLADKILNGEEGAVDRYLDYLKA
GSSDYPIEVLKKAGVDMTSKEPILSALDVFEEKLNEMEKLLLNE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=345037 Len3610_RS02350 WP_176446541.1 452420..454234(+) (pepF) [Lentibacillus sp. CBA3610]
ATGGCGAAAGCAACAAAGGAATTACCGAAAAGAAGTGAGATTCCGGAAGAACGTAAATGGAAACTGGATGACATTTTTGC
AACGGATGAAGATTGGGAACAAGAATTGAAATCATTGCAGAACGATCTTCCGGCAATTGAGAAATTTCAGGGTAAACTCG
CTGACTCAGCACAAAACCTGTATGATGCTTTGCAGCTTCAGGATGAGCTCTCGGAACGATTAGGCAAACTATTTACATAT
GCACATATGCGTTCTGATCAGGATACGACGAACTCGACTTATCAGGCGATGGATGCCAAAGCGGAAAATGTATTGACGGT
TGCATCCAGTACGATGAGTTTTATTGTTCCGGAAATTCTGGCTATGGATGAATCCAAATTGCAAAATTTTCTGGAAGAAC
ATGAGGACTTAAAATTTTATGAACACGTATTGGATGAGATTAGCCGCCAGCGCCCACACGTATTAAGTGAAAAAGAGGAG
GCATTGCTGGCCGAAGCATCTGAGCCAATGTCATCAGCATCCAATACGTTTGGTATGCTCAATAATGCTGATTTAACATT
CCCTTCAATTAAAAATGAAAACGGGGAAGAAGTTGACTTAACGCATGGCCGGTATATCGGGTTTATGCAATCAACGGATC
GTAATGTACGGAAAGCGGCCTTCAAAGCCATGTATGAAACGTACGGCAAGTTCATTAATACGTTTGCATCCACACTTGCA
GGTACAGTTAAAGCGGATAATTTCGATGCGAAAGTGCATCATTATGATTCTGCACGCCAGGCTGCATTAGACAGCAATAA
TATTCCGGAAGAGGTTTATGATAATCTTGTTGAGGCTGTCAATGAAAGACTGCCACTGTTGCATCGTTACCAGCGCTTGC
GTAAACAAGTACTCGCTGTTGATGAGCTGCACATGTATGATGTATATGCTCCGCTGGTAGAAAATGCCGATATGACATTT
TCATATGAGGAAGCCCAGAAATATGTACTTGAAGGATTGAAACCGTTGGGCGATGATTATGTCAATGTCCTGAAAGAAGG
CTTCGGCAGCCGCTGGATCGATGTGGAAGAAAGTAAAGGTAAACGCAGCGGGGCGTATTCATCCGGTGCATATGGAACGC
ATCCGTATATTTTGCTGAATTGGCAGGATAAATTGGATGACCTGTTCACATTGGCACATGAATTGGGGCATTCGCTGCAC
AGTTACTACACCCACAAACATCAGCAATTCCGGTATGGCAATTATTCGATTTTCGTTGCTGAAGTTGCTTCCACAACGAA
TGAAGCATTATTAAACGATTACTTGCTGAACAATGTTGACGATGAGAAAGAAAAATTATATTTGCTTAACCACTTTTTGG
AAGGATTCCGTGGAACGGTTTTCCGGCAGACAATGTTTGCGGAATTTGAACATGAGATTCATAAACGTGCCCAAAATGGT
GAAGCTCTGACGGCTGAAAATTTAACTGCCATCTATCATGATTTGAATAAAAAATATTATGGTGATGATGTGGTTTCAGA
TGACGAAATCGGCAAGGAATGGGCAAGGATCCCTCATTTCTACATGAATTATTACGTCTATCAGTATGCAACAGGTTACT
CTGCAGCCACGACACTTGCTGATAAGATTTTAAACGGTGAAGAGGGAGCTGTGGATCGCTATCTGGACTATCTGAAAGCG
GGAAGCAGCGACTATCCGATCGAAGTTCTGAAAAAAGCCGGTGTCGATATGACATCAAAAGAGCCGATACTTTCGGCACT
CGACGTGTTTGAGGAAAAATTGAATGAAATGGAGAAATTGCTTTTGAATGAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(208-587)

Oligopeptidase F (Peptidase_M3_N)

(118-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8S3N6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.438

97.848

0.503

Multiple sequence alignment