Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   EWA64_RS18675 Genome accession   NZ_CP035922
Coordinates   700365..701543 (-) Length   392 a.a.
NCBI ID   WP_061895715.1    Uniprot ID   -
Organism   Vibrio cidicii strain 2423-01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 695365..706543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA64_RS18660 - 696179..697303 (-) 1125 WP_061895718.1 fatty acid desaturase -
  EWA64_RS18665 - 697471..698019 (+) 549 WP_061895717.1 GNAT family N-acetyltransferase -
  EWA64_RS18670 cqsS 698281..700326 (+) 2046 WP_061895716.1 response regulator Regulator
  EWA64_RS18675 cqsA 700365..701543 (-) 1179 WP_061895715.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EWA64_RS18680 ylqF 701818..702762 (-) 945 WP_061895714.1 ribosome biogenesis GTPase YlqF -
  EWA64_RS18685 - 703096..704052 (+) 957 WP_061895713.1 AEC family transporter -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 43609.89 Da        Isoelectric Point: 6.4972

>NTDB_id=345017 EWA64_RS18675 WP_061895715.1 700365..701543(-) (cqsA) [Vibrio cidicii strain 2423-01]
MNNMFPKQLPEFISNRLLFQVEDLIHSNKSKTHLVMGKVPENDSIIMQSNDYLSIANHPEIKQVHTDAINKCDASVVMSA
IFLQSEKSKPNFEKQLANYTGMSSCLLSQSGWAANIGLLQTICAPTTPVYIDFFTHMSLWEGARIADAAIHPFMHNNLNH
LIKQVERYGAGIIIVDSVYSTIGTVAPLKDLCDIAERYGCAIIVDESHSLGTHGPQGAGLVKELELTSKVDFITVSLAKS
FAYRAGAILGHDLISQTLPFVAYPAIFSSTLLPFEIDRLEKTLEIVRGSDERRAQVGRLARQLRLGLKQIGFQVRSQSQI
VAIETADERNTEHVRDYLEDNGIFGSVFCRPATGKNKNIIRFSINASLDEQDIEKTIEVCRSAYQSGQFIFV

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=345017 EWA64_RS18675 WP_061895715.1 700365..701543(-) (cqsA) [Vibrio cidicii strain 2423-01]
ATGAATAACATGTTTCCTAAACAACTACCTGAATTTATATCAAATCGCTTATTATTTCAGGTAGAAGACCTGATTCATAG
TAACAAGAGCAAAACACATTTAGTCATGGGAAAAGTCCCAGAAAATGACTCAATTATCATGCAGAGCAATGATTATTTAT
CAATTGCCAATCATCCTGAAATCAAACAGGTTCATACTGATGCAATAAATAAATGCGATGCCAGTGTTGTGATGTCGGCT
ATTTTTTTACAAAGCGAAAAGAGCAAACCCAATTTTGAAAAGCAGCTCGCCAACTATACTGGAATGTCATCTTGTCTGCT
GTCACAATCCGGCTGGGCAGCCAATATTGGTCTTTTGCAAACGATCTGCGCCCCTACAACCCCGGTCTACATTGACTTTT
TTACCCATATGTCACTTTGGGAAGGAGCGCGTATCGCAGATGCAGCCATCCATCCTTTTATGCATAACAACCTCAATCAC
CTGATTAAGCAGGTTGAACGCTACGGTGCAGGGATCATCATCGTTGATTCTGTCTACAGCACAATTGGCACTGTCGCACC
GCTCAAGGATCTGTGTGACATCGCAGAAAGATATGGATGCGCGATTATCGTCGATGAGTCTCACTCGTTGGGGACACATG
GCCCACAAGGCGCGGGATTAGTCAAAGAGCTAGAACTGACTAGTAAAGTTGACTTTATTACTGTCAGCCTAGCCAAGTCG
TTTGCTTATCGGGCCGGGGCGATTCTTGGCCACGATCTCATTTCACAAACTCTACCGTTTGTTGCCTACCCGGCGATATT
CAGCTCTACTTTACTGCCATTTGAAATCGACAGATTAGAGAAAACACTGGAAATTGTCCGAGGAAGTGATGAAAGAAGAG
CCCAAGTCGGACGCTTGGCAAGACAGCTTCGTCTAGGGCTCAAGCAGATCGGTTTTCAAGTTCGCAGCCAATCTCAAATT
GTCGCCATTGAAACGGCCGATGAGCGGAACACCGAGCATGTACGAGACTATTTAGAAGACAACGGTATTTTTGGCTCTGT
ATTTTGTCGTCCAGCCACAGGAAAAAATAAGAATATCATCCGATTTTCTATTAATGCATCACTTGACGAACAAGATATAG
AAAAAACAATAGAGGTATGCCGCTCGGCCTATCAGTCTGGACAATTTATTTTTGTTTAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.763

98.98

0.582

Multiple sequence alignment