Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   EWA64_RS18670 Genome accession   NZ_CP035922
Coordinates   698281..700326 (+) Length   681 a.a.
NCBI ID   WP_061895716.1    Uniprot ID   -
Organism   Vibrio cidicii strain 2423-01     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 693281..705326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA64_RS18645 - 693295..694302 (+) 1008 WP_061895720.1 substrate-binding domain-containing protein -
  EWA64_RS18650 - 694553..694768 (+) 216 WP_061895719.1 hypothetical protein -
  EWA64_RS18655 - 695141..696118 (+) 978 WP_045572291.1 chemotaxis protein -
  EWA64_RS18660 - 696179..697303 (-) 1125 WP_061895718.1 fatty acid desaturase -
  EWA64_RS18665 - 697471..698019 (+) 549 WP_061895717.1 GNAT family N-acetyltransferase -
  EWA64_RS18670 cqsS 698281..700326 (+) 2046 WP_061895716.1 response regulator Regulator
  EWA64_RS18675 cqsA 700365..701543 (-) 1179 WP_061895715.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EWA64_RS18680 ylqF 701818..702762 (-) 945 WP_061895714.1 ribosome biogenesis GTPase YlqF -
  EWA64_RS18685 - 703096..704052 (+) 957 WP_061895713.1 AEC family transporter -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78300.77 Da        Isoelectric Point: 6.9366

>NTDB_id=345016 EWA64_RS18670 WP_061895716.1 698281..700326(+) (cqsS) [Vibrio cidicii strain 2423-01]
MESIRKVYQYANPNLTLVGWMGFLGFPTYYWVWTHLFPQSYENLPLRLLCSALFLLLVLRERLPMPIRTRMPIVYLIVIT
TCLPFFFFFMLLMNEWSNVWVMSFMAAIFLHILLVHMTKVMFSQTFIGVGMAVLAAYVCNDYHLVISVDWRHVPIFLFIY
LFGNLFYFRNQVEHESRISIAKAFGAGIAHEMRNPLSGLVASIDVIQSVIPNDKVEKRSNYALSAKDVALLREVSEEAMK
IIHSGNETIDLLLTSIDENRVSRSTFKRHSANEVVKNAIESFSYKKSADRQCIRYHEEGNFDFFGSHTLLKYVIYNLVKN
AFNYRNPEVFTIDITISRDDTENMVVVRDNGQGIAPASMEHIFKDFYTTGKSSNYGLGLPFCKKVMRSFGGSIACQSAQG
QWTEFTLTFPLVKSKVVGEIKYELMKLKSVFFISEQEILCKKMAESARSSGFALTVKTAEQACLMAEHEFEYDLIFLDLS
SVDLKNSQLDRLESLLHFTEARIVYLYQDAIVNRRNQSTLPVLWVETQSWLLNTAQIIDRLMFDANFDAYMPAPVRKSDD
GKRVIMVVDDNDSLRKFTSLLLEKQGFEVIQREDGREALHALEKHHVDLILMDIEMPILDGIEASIQIRQSNKKYAHVPI
IAHTGDSTPVTLERINQSGMSDYLVKPADKNKLLDKISHWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=345016 EWA64_RS18670 WP_061895716.1 698281..700326(+) (cqsS) [Vibrio cidicii strain 2423-01]
ATGGAATCGATTCGCAAGGTTTATCAATATGCTAACCCTAACTTGACGCTTGTCGGCTGGATGGGGTTTCTCGGCTTTCC
GACCTACTACTGGGTTTGGACGCATCTTTTTCCTCAGTCTTACGAGAATCTTCCGCTCAGGCTACTTTGTTCAGCTTTAT
TCTTGCTGCTGGTCTTGCGAGAGCGGTTACCCATGCCGATCCGCACGCGTATGCCCATCGTCTATTTGATAGTGATAACA
ACCTGTTTGCCATTTTTCTTCTTTTTTATGCTGTTGATGAATGAATGGTCGAACGTTTGGGTCATGTCCTTTATGGCAGC
GATTTTCTTACACATCTTGTTAGTCCATATGACTAAGGTAATGTTTAGTCAAACATTTATCGGTGTTGGCATGGCGGTAC
TTGCCGCGTATGTGTGTAATGACTACCATCTAGTGATTTCCGTCGACTGGCGTCATGTGCCGATATTTCTCTTTATCTAT
CTGTTTGGCAACTTATTCTATTTTCGCAATCAAGTTGAACATGAATCACGGATCTCTATCGCCAAAGCGTTTGGTGCCGG
AATCGCCCATGAAATGCGTAATCCGCTAAGTGGCTTGGTTGCTTCTATTGATGTGATTCAATCGGTGATTCCCAACGATA
AAGTTGAAAAACGCAGTAACTACGCGCTAAGTGCCAAAGACGTCGCTTTGCTACGAGAAGTAAGTGAAGAAGCGATGAAG
ATTATCCATTCGGGCAATGAGACGATTGATCTGCTTTTAACCTCGATTGATGAAAATCGTGTATCTCGTTCAACCTTTAA
GCGACATTCGGCCAATGAAGTGGTCAAAAATGCCATTGAAAGCTTTAGCTATAAAAAATCGGCGGACAGGCAATGCATTC
GCTACCACGAAGAAGGGAACTTTGACTTTTTTGGCAGCCACACGCTACTGAAGTACGTTATCTATAACCTTGTTAAAAAT
GCGTTTAACTATCGCAATCCTGAGGTGTTCACCATTGATATTACGATAAGTCGCGATGATACGGAGAACATGGTTGTCGT
GCGAGACAACGGTCAGGGAATTGCGCCAGCGTCGATGGAACATATTTTTAAGGATTTCTATACCACTGGGAAAAGTAGTA
ACTATGGTTTGGGACTGCCATTTTGTAAAAAGGTGATGCGATCCTTTGGTGGCAGCATTGCTTGTCAATCGGCGCAAGGG
CAATGGACGGAGTTTACGCTGACGTTTCCGTTGGTAAAATCTAAAGTAGTTGGTGAAATCAAGTATGAGCTGATGAAACT
CAAGTCGGTCTTTTTTATCAGTGAGCAAGAGATTCTGTGTAAAAAAATGGCGGAATCAGCTCGCTCAAGCGGTTTCGCCC
TCACGGTAAAAACGGCCGAGCAAGCGTGCTTAATGGCCGAACATGAGTTTGAATATGATCTTATCTTTCTGGATTTGAGT
TCGGTCGACTTAAAAAACAGCCAGCTAGACAGGCTAGAATCTTTACTGCATTTTACCGAAGCGCGCATTGTTTACTTGTA
TCAAGATGCGATAGTCAATCGCCGCAACCAAAGTACATTGCCGGTATTGTGGGTTGAAACGCAATCTTGGTTACTCAATA
CAGCGCAGATTATCGACAGACTCATGTTTGACGCAAACTTTGATGCGTACATGCCCGCTCCGGTCAGAAAATCCGACGAT
GGCAAACGGGTGATAATGGTGGTTGACGATAATGATTCGCTGCGAAAATTCACCTCTTTATTATTGGAGAAACAGGGTTT
CGAAGTGATTCAAAGAGAAGATGGTCGGGAAGCGCTTCATGCGTTGGAAAAACATCATGTTGATCTCATTTTGATGGATA
TTGAAATGCCGATATTAGACGGTATAGAAGCGTCAATTCAGATCCGTCAGTCAAATAAAAAATATGCTCATGTTCCAATT
ATCGCCCATACTGGTGACAGTACTCCCGTAACACTAGAGAGAATTAATCAGTCAGGAATGTCTGATTATTTAGTTAAACC
CGCCGATAAAAATAAACTACTAGATAAAATATCACATTGGATATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-411)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.123

100

0.493

Multiple sequence alignment