Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   EWA64_RS05800 Genome accession   NZ_CP035921
Coordinates   1067087..1067701 (+) Length   204 a.a.
NCBI ID   WP_039430441.1    Uniprot ID   -
Organism   Vibrio cidicii strain 2423-01     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1062087..1072701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA64_RS05780 - 1062411..1063334 (-) 924 WP_061895196.1 ABC transporter ATP-binding protein -
  EWA64_RS05785 - 1063486..1065144 (-) 1659 WP_061895195.1 SulP family inorganic anion transporter -
  EWA64_RS05790 can 1065380..1066048 (+) 669 WP_039439526.1 carbonate dehydratase -
  EWA64_RS05795 hpt 1066165..1066695 (-) 531 WP_039430440.1 hypoxanthine phosphoribosyltransferase -
  EWA64_RS05800 opaR 1067087..1067701 (+) 615 WP_039430441.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  EWA64_RS05805 lpdA 1067896..1069323 (-) 1428 WP_061895194.1 dihydrolipoyl dehydrogenase -
  EWA64_RS05810 aceF 1069579..1071486 (-) 1908 WP_061895193.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23492.92 Da        Isoelectric Point: 6.3361

>NTDB_id=344978 EWA64_RS05800 WP_039430441.1 1067087..1067701(+) (opaR) [Vibrio cidicii strain 2423-01]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAQDNLKNITNAMIELVTQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFVRAIERGEVCDKHSPE
DLANMFLGICYSLFVQANRAKSEAELTKLVNSYLQMLCIYKGES

Nucleotide


Download         Length: 615 bp        

>NTDB_id=344978 EWA64_RS05800 WP_039430441.1 1067087..1067701(+) (opaR) [Vibrio cidicii strain 2423-01]
ATGGACTCAATAGCAAAGAGACCTCGAACTCGTTTATCTCCACTGAAACGTAAACAACAACTGATGGAAATCGCACTGGA
AGTGTTTGCTCGTCGTGGCATCGGCCGCGGTGGTCACGCAGACATCGCCGAGATTGCGCAGGTTTCTGTCGCCACCGTAT
TTAACTATTTCCCGACCCGTGAAGATCTGGTTGATGAAGTGCTCAATCATGTCGTGCGTCAGTTTTCAAACTTCCTGTCC
GATAACATTGACCTCGACATTCACGCGCAAGATAACCTCAAAAACATCACTAACGCGATGATTGAACTGGTGACTCAAGA
CTGTCATTGGCTCAAAGTGTGGTTTGAATGGAGCGCATCAACGCGTGATGAAGTATGGCCACTATTTGTCACCACCAACC
GCACTAACCAACTGCTGGTACAGAACATGTTTGTTCGCGCCATCGAGCGTGGCGAAGTGTGTGATAAACACAGCCCGGAA
GATCTGGCGAATATGTTCCTTGGCATCTGTTACTCGCTGTTTGTGCAAGCTAACCGCGCCAAGAGCGAAGCGGAACTGAC
CAAACTAGTCAACAGCTACCTACAAATGCTTTGCATCTATAAGGGTGAGAGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

88.67

99.51

0.882
  hapR Vibrio cholerae C6706

71.859

97.549

0.701
  hapR Vibrio cholerae strain A1552

71.859

97.549

0.701

Multiple sequence alignment