Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   GEV49_RS17060 Genome accession   NZ_CP045547
Coordinates   3856659..3858068 (+) Length   469 a.a.
NCBI ID   WP_054100914.1    Uniprot ID   A0A6N9UC12
Organism   Streptomyces sp. SYP-A7193     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3851659..3863068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV49_RS17040 (GEV49_17140) - 3851767..3852624 (-) 858 WP_194279972.1 sugar phosphate isomerase/epimerase family protein -
  GEV49_RS17045 (GEV49_17145) - 3852756..3853688 (-) 933 WP_153178582.1 Ppx/GppA phosphatase family protein -
  GEV49_RS17050 (GEV49_17150) - 3853760..3854572 (+) 813 WP_007453317.1 hypothetical protein -
  GEV49_RS17055 (GEV49_17155) - 3854597..3856393 (-) 1797 WP_153178583.1 BACON domain-containing protein -
  GEV49_RS17060 (GEV49_17160) radA/sms 3856659..3858068 (+) 1410 WP_054100914.1 DNA repair protein RadA Machinery gene
  GEV49_RS17065 (GEV49_17165) disA 3858150..3859274 (+) 1125 WP_153178584.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  GEV49_RS39785 - 3859293..3860150 (-) 858 WP_165685209.1 hypothetical protein -
  GEV49_RS17080 (GEV49_17180) - 3860325..3860978 (+) 654 WP_194279973.1 phosphatase PAP2 family protein -
  GEV49_RS17085 (GEV49_17185) - 3860997..3861668 (-) 672 WP_153178588.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49748.79 Da        Isoelectric Point: 7.7530

>NTDB_id=344894 GEV49_RS17060 WP_054100914.1 3856659..3858068(+) (radA/sms) [Streptomyces sp. SYP-A7193]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPADPGRVPDGMKVLEVADMGDALRVLPRSRRREAPRDEGDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=344894 GEV49_RS17060 WP_054100914.1 3856659..3858068(+) (radA/sms) [Streptomyces sp. SYP-A7193]
ATGGCTGCCCGTACGAAGTCCGCCAAGGAACGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTGCGCACGACCACGCCGGGGC
GCGTGACCACGTCCGCGGTGCCGATCGGGCAGGTCGACGGACGGCAGGCGACCGCCCGTTCCACCGGCGTGCCCGAGCTG
GACCGGGTACTCGGCGGGGGTCTGGTGCCCGGAGCCGTGGTGCTGGTCGCGGGTGAGCCGGGCGTCGGCAAGTCCACGCT
GCTCCTCGACGTGGCGGCCAAGTCCGCGAGCGACGAGCACCGGACGCTCTATGTCACCGGTGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGGGCCGACCGGATCCACGCCATCGACGACCATCTGTACCTCGCCGCCGAGACCGACCTCGCCGCGGTGCTC
GGGCACCTGGACGCCGTGAAGCCGTCGCTGCTGATCCTGGACTCCGTGCAGACGGTGGCCTCCCCCGAGATCGACGGTGC
CCCGGGCGGCATGGCGCAGGTGCGGGAGGTCGCGGGCGCGCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TCGTGGGCCACGTCACCAAGGACGGGGCCATCGCCGGGCCCCGGCTGCTCGAGCACCTGGTGGACGTCGTGCTGCACTTC
GAGGGCGACCGGCACGCGCGGCTGCGGCTGGTGCGGGGCGTCAAGAACCGGTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGACCCCAGCGGGCTGTTCCTCACCCGGCGGGCCGAGCCGGTGCCCG
GCACTTGTCTGACCGTCACCCTGGAGGGGCGCCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCCTCCCCCCGGCGCACGACCTCCGGGCTCGAGACCTCGCGGGTGTCGATGATGCTGGCCGTGCTCGAGCAGCGCGGCCG
CATCAGCGCCCTGGGCAAGAGGGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCGGCCGCCGACCTCG
CCGTCGCGCTGGCGCTGGCGAGTGCGGCCAGTGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAGGTCGGCCTC
GCCGGAGAGGTGAGACGGGTCACGGGGGTGCAGCGCAGGCTCTCCGAGGCGCACCGGCTGGGCTTCACGCACGCCCTGGT
ACCGGCCGATCCGGGCAGGGTCCCCGACGGCATGAAGGTCCTGGAAGTCGCGGACATGGGAGACGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGCCGAGAGGCCCCACGGGACGAGGGGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N9UC12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus mitis SK321

44.366

90.832

0.403
  radA Streptococcus mitis NCTC 12261

44.366

90.832

0.403