Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GAY69_RS10880 Genome accession   NZ_CP045472
Coordinates   2260068..2260463 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain ZY05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2255068..2265463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAY69_RS10850 (GAY69_11045) - 2255088..2255321 (+) 234 WP_000384520.1 DUF1146 family protein -
  GAY69_RS10855 (GAY69_11050) murA 2255432..2256697 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GAY69_RS10860 (GAY69_11055) fabZ 2256731..2257171 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  GAY69_RS10865 (GAY69_11060) - 2257228..2257668 (-) 441 WP_000846746.1 YwpF-like family protein -
  GAY69_RS10870 (GAY69_11065) istA 2257879..2259171 (+) 1293 WP_000777467.1 IS21 family transposase -
  GAY69_RS10875 (GAY69_11070) istB 2259164..2259925 (+) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  GAY69_RS10880 (GAY69_11075) ssb 2260068..2260463 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  GAY69_RS10885 (GAY69_11080) sceD 2260852..2261547 (+) 696 WP_000751998.1 lytic transglycosylase SceD -
  GAY69_RS10890 (GAY69_11085) tenA 2261935..2262624 (+) 690 WP_000396067.1 thiaminase II -
  GAY69_RS10895 (GAY69_11090) thiD 2262617..2263447 (+) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  GAY69_RS10900 (GAY69_11095) thiM 2263431..2264222 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  GAY69_RS10905 (GAY69_11100) thiE 2264224..2264865 (+) 642 WP_000483147.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=344600 GAY69_RS10880 WP_000932694.1 2260068..2260463(+) (ssb) [Staphylococcus aureus strain ZY05]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=344600 GAY69_RS10880 WP_000932694.1 2260068..2260463(+) (ssb) [Staphylococcus aureus strain ZY05]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992