Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ERW13_RS14050 Genome accession   NZ_CP035791
Coordinates   2715517..2715912 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 592     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2710517..2720912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERW13_RS14020 - 2711775..2712179 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ERW13_RS14025 - 2712517..2712609 (+) 93 WP_001790611.1 hypothetical protein -
  ERW13_RS14030 - 2712741..2712974 (+) 234 WP_000384523.1 DUF1146 family protein -
  ERW13_RS14035 murA 2713085..2714350 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ERW13_RS14040 fabZ 2714384..2714824 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ERW13_RS14045 - 2714883..2715323 (-) 441 WP_000846746.1 YwpF-like family protein -
  ERW13_RS14050 ssb 2715517..2715912 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ERW13_RS14055 sceD 2716301..2716996 (+) 696 WP_000752005.1 lytic transglycosylase SceD -
  ERW13_RS14060 tenA 2717383..2718072 (+) 690 WP_000396077.1 thiaminase II -
  ERW13_RS14065 thiD 2718065..2718895 (+) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ERW13_RS14070 thiM 2718879..2719670 (+) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  ERW13_RS14075 thiE 2719672..2720313 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=344462 ERW13_RS14050 WP_000932694.1 2715517..2715912(+) (ssb) [Staphylococcus aureus strain 592]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=344462 ERW13_RS14050 WP_000932694.1 2715517..2715912(+) (ssb) [Staphylococcus aureus strain 592]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment