Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EPA93_RS40780 Genome accession   NZ_CP035758
Coordinates   9482903..9484309 (-) Length   468 a.a.
NCBI ID   WP_129893039.1    Uniprot ID   A0A4P6K1L3
Organism   Ktedonosporobacter rubrisoli strain SCAWS-G2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9477903..9489309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPA93_RS40755 (EPA93_40755) rcrQ 9479138..9479317 (+) 180 WP_207229331.1 hypothetical protein Regulator
  EPA93_RS40760 (EPA93_40760) - 9479355..9479912 (-) 558 WP_129893035.1 NADPH-dependent FMN reductase -
  EPA93_RS40765 (EPA93_40765) ispF 9479979..9480455 (-) 477 WP_129893036.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  EPA93_RS40770 (EPA93_40770) ispD 9480452..9481189 (-) 738 WP_129893037.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  EPA93_RS40775 (EPA93_40775) - 9481250..9482407 (-) 1158 WP_129893038.1 PIN domain-containing protein -
  EPA93_RS40780 (EPA93_40780) radA 9482903..9484309 (-) 1407 WP_129893039.1 DNA repair protein RadA Machinery gene
  EPA93_RS40785 (EPA93_40785) - 9484427..9486697 (-) 2271 WP_277988697.1 ATP-dependent Clp protease ATP-binding subunit -
  EPA93_RS50625 - 9486694..9486969 (-) 276 WP_277988698.1 Clp protease N-terminal domain-containing protein -
  EPA93_RS40790 (EPA93_40790) - 9487739..9489262 (-) 1524 WP_207229332.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 49959.83 Da        Isoelectric Point: 6.8155

>NTDB_id=344264 EPA93_RS40780 WP_129893039.1 9482903..9484309(-) (radA) [Ktedonosporobacter rubrisoli strain SCAWS-G2]
MAKLRIKYVCQQCGGEQSKWMGKCPDCGSWNTLEETTDIPPSPAQQRRQTLLGNTSLTQSMPIVLPDIKPLIQQRISVGY
AEMDRVLGGGLVAGSLVLIGGEPGIGKSTLLLQVSGAIADNTGPVLYVSGEESIEQVKMRAERMDIKGEKLYLLSAIEMD
VISEAAQRLKPALLIVDSIQTVLASHLTAAPGSISQIRECTLQLMQLAKSTHIPVFIIGHVTKEGIVAGPKALEHIADAV
LYLEGERYHSYRLLRSVKNRFGATHEVGIFEMHGEGLQEVTNPSAAFLSDRAAGASGSAVVVSMEGTRPLLVEVQALVTP
SNFGNARCTTNGVEHNRLLMLLAVLTKRVGLAVGNHDVYANVVGGFTLEEPAVDLGVAAAIASSYREKYIAPDMALIGEV
GLSGELRAVSRLNLRVRECAKLGFKRCIVPSAGRGAQIRAELADAGLPDDFKVLTASSLAVALEIALH

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=344264 EPA93_RS40780 WP_129893039.1 9482903..9484309(-) (radA) [Ktedonosporobacter rubrisoli strain SCAWS-G2]
ATGGCAAAGCTGCGTATAAAATATGTCTGCCAGCAGTGCGGTGGCGAACAGAGTAAGTGGATGGGCAAGTGCCCGGATTG
TGGCTCGTGGAACACGCTAGAGGAAACGACAGACATACCACCCAGTCCAGCTCAGCAGCGCCGTCAAACCTTGTTGGGAA
ATACCTCTCTTACTCAGAGCATGCCTATCGTACTTCCCGACATTAAGCCGCTTATCCAGCAGCGCATTTCTGTCGGCTAT
GCTGAAATGGATCGTGTCCTGGGAGGTGGCCTGGTGGCCGGCTCTTTAGTGTTGATTGGTGGAGAGCCAGGCATCGGCAA
ATCTACGCTTCTCCTCCAGGTTTCCGGCGCTATTGCTGATAACACGGGCCCTGTCCTTTATGTCTCAGGCGAGGAATCCA
TCGAGCAGGTCAAGATGCGCGCGGAACGCATGGATATCAAGGGCGAAAAACTTTACCTGTTGTCAGCTATCGAGATGGAT
GTGATTAGCGAGGCAGCTCAGCGCCTCAAACCAGCTTTGCTGATTGTTGACTCAATACAAACAGTTCTGGCCAGCCATCT
TACCGCTGCTCCAGGCAGCATTAGCCAGATACGCGAATGCACGCTCCAGCTCATGCAACTGGCCAAAAGCACGCATATTC
CAGTTTTTATCATTGGACATGTGACGAAGGAAGGTATTGTTGCAGGCCCAAAGGCACTTGAGCACATTGCCGACGCTGTT
CTCTACCTTGAGGGAGAACGGTATCATTCTTATCGTCTCCTGCGTAGCGTTAAAAACCGCTTTGGGGCCACTCACGAGGT
GGGGATTTTTGAGATGCACGGGGAAGGCCTGCAAGAGGTTACCAACCCGTCTGCGGCTTTTCTCTCCGATAGGGCGGCTG
GGGCAAGCGGATCTGCCGTGGTTGTCAGTATGGAGGGCACGCGGCCCCTTCTGGTAGAAGTACAGGCCCTGGTGACGCCA
AGTAACTTTGGCAACGCGCGCTGCACTACAAACGGAGTCGAACATAATCGCCTGCTCATGCTCCTGGCCGTGCTTACCAA
ACGCGTTGGGCTGGCTGTGGGAAATCATGATGTATACGCAAATGTGGTGGGAGGATTTACCTTAGAGGAACCTGCCGTCG
ATCTGGGTGTAGCCGCGGCCATTGCCTCTAGCTATCGCGAGAAGTATATCGCGCCAGATATGGCGTTAATCGGAGAAGTG
GGCCTCTCTGGCGAATTAAGGGCGGTAAGTCGTCTGAATTTGCGCGTACGAGAATGTGCCAAACTCGGGTTTAAACGCTG
TATTGTGCCCAGTGCAGGAAGAGGGGCACAGATACGTGCAGAATTGGCGGATGCTGGTCTTCCTGACGATTTTAAAGTAC
TTACAGCCAGTTCACTTGCAGTTGCTTTGGAGATTGCTTTACACTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(86-225)

Subunit ChlI of Mg-chelatase (ChlI)

(368-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6K1L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.82

99.786

0.517
  radA Streptococcus pneumoniae Rx1

49.032

99.359

0.487
  radA Streptococcus pneumoniae D39

49.032

99.359

0.487
  radA Streptococcus pneumoniae R6

49.032

99.359

0.487
  radA Streptococcus pneumoniae TIGR4

49.032

99.359

0.487
  radA Streptococcus mitis NCTC 12261

51.74

92.094

0.476
  radA Streptococcus mitis SK321

51.74

92.094

0.476

Multiple sequence alignment