Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EPA93_RS40755 Genome accession   NZ_CP035758
Coordinates   9479138..9479317 (+) Length   59 a.a.
NCBI ID   WP_207229331.1    Uniprot ID   -
Organism   Ktedonosporobacter rubrisoli strain SCAWS-G2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 9474138..9484317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPA93_RS40735 (EPA93_40735) - 9474232..9475281 (+) 1050 WP_129893032.1 ABC transporter substrate-binding protein -
  EPA93_RS40740 (EPA93_40740) - 9475352..9476248 (+) 897 WP_129893033.1 class I SAM-dependent methyltransferase -
  EPA93_RS40745 (EPA93_40745) - 9476675..9477109 (-) 435 WP_129893034.1 GNAT family N-acetyltransferase -
  EPA93_RS40750 (EPA93_40750) - 9477442..9478950 (-) 1509 WP_129886188.1 IS66 family transposase -
  EPA93_RS40755 (EPA93_40755) rcrQ 9479138..9479317 (+) 180 WP_207229331.1 hypothetical protein Regulator
  EPA93_RS40760 (EPA93_40760) - 9479355..9479912 (-) 558 WP_129893035.1 NADPH-dependent FMN reductase -
  EPA93_RS40765 (EPA93_40765) ispF 9479979..9480455 (-) 477 WP_129893036.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  EPA93_RS40770 (EPA93_40770) ispD 9480452..9481189 (-) 738 WP_129893037.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  EPA93_RS40775 (EPA93_40775) - 9481250..9482407 (-) 1158 WP_129893038.1 PIN domain-containing protein -
  EPA93_RS40780 (EPA93_40780) radA 9482903..9484309 (-) 1407 WP_129893039.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6826.84 Da        Isoelectric Point: 10.4173

>NTDB_id=344263 EPA93_RS40755 WP_207229331.1 9479138..9479317(+) (rcrQ) [Ktedonosporobacter rubrisoli strain SCAWS-G2]
MKGRTTLVIARRLSTIEHADKIIVLERGRVVEQGTHESLLARQGRYSQLYTTLFREQEA

Nucleotide


Download         Length: 180 bp        

>NTDB_id=344263 EPA93_RS40755 WP_207229331.1 9479138..9479317(+) (rcrQ) [Ktedonosporobacter rubrisoli strain SCAWS-G2]
ATGAAGGGGCGTACAACGCTTGTCATTGCCCGTCGCTTGAGCACGATCGAGCATGCAGATAAGATCATCGTGTTGGAGCG
AGGAAGAGTCGTTGAGCAAGGAACGCATGAAAGCTTGCTTGCGCGTCAGGGAAGATATTCGCAGCTCTACACCACCCTGT
TCCGAGAACAAGAAGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.847

100

0.508
  rcrP Streptococcus mutans UA159

47.368

96.61

0.458
  comA/nlmT Streptococcus mutans UA159

46

84.746

0.39

Multiple sequence alignment