Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   GCU76_RS09255 Genome accession   NZ_CP045425
Coordinates   1763584..1764015 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain JAAA     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1758584..1769015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS09235 spoVS 1759146..1759406 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  GCU76_RS09240 tdh 1759671..1760714 (+) 1044 WP_017694900.1 L-threonine 3-dehydrogenase -
  GCU76_RS09245 kbl 1760727..1761905 (+) 1179 WP_017694901.1 glycine C-acetyltransferase -
  GCU76_RS09250 miaB 1762053..1763582 (+) 1530 WP_017694902.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GCU76_RS09255 ymcA 1763584..1764015 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  GCU76_RS09260 cotE 1764277..1764822 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  GCU76_RS09265 hexA 1764955..1767531 (+) 2577 WP_041057500.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=344205 GCU76_RS09255 WP_003231834.1 1763584..1764015(+) (ymcA) [Bacillus subtilis strain JAAA]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=344205 GCU76_RS09255 WP_003231834.1 1763584..1764015(+) (ymcA) [Bacillus subtilis strain JAAA]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACTTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1