Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GCU76_RS07835 Genome accession   NZ_CP045425
Coordinates   1478546..1479121 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis strain JAAA     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473546..1484121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS07805 dapD 1473733..1474443 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GCU76_RS07810 dapI 1474513..1475637 (+) 1125 WP_017697280.1 N-acetyldiaminopimelate deacetylase -
  GCU76_RS07815 ykuS 1475699..1475944 (+) 246 WP_003232382.1 YkuS family protein -
  GCU76_RS07820 mscT 1475981..1476784 (-) 804 WP_017697281.1 small-conductance mechanosensitive channel protein MscT -
  GCU76_RS07825 ahpA 1477021..1477563 (+) 543 WP_152425438.1 biofilm-specific peroxidase AhpA -
  GCU76_RS07830 ykuV 1477634..1478080 (+) 447 WP_014476671.1 thiol-disulfide oxidoreductase YkuV -
  GCU76_RS07835 rok 1478546..1479121 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  GCU76_RS07840 - 1479242..1480392 (+) 1151 WP_087614160.1 IS3 family transposase -
  GCU76_RS07845 cse15 1480452..1481417 (-) 966 WP_041055908.1 spore protein Cse15 -
  GCU76_RS07850 mobA 1481554..1482153 (+) 600 WP_041055905.1 molybdenum cofactor guanylyltransferase -
  GCU76_RS07855 moeB 1482204..1483223 (+) 1020 WP_041055903.1 molybdopterin-synthase adenylyltransferase MoeB -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=344192 GCU76_RS07835 WP_003232378.1 1478546..1479121(+) (rok) [Bacillus subtilis strain JAAA]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=344192 GCU76_RS07835 WP_003232378.1 1478546..1479121(+) (rok) [Bacillus subtilis strain JAAA]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment