Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   SDEG_RS11265 Genome accession   NC_012891
Coordinates   50949..51044 (+) Length   31 a.a.
NCBI ID   WP_198455558.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 45949..56044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS00275 (SDEG_0054) - 47010..48266 (+) 1257 WP_012766419.1 DUF4041 domain-containing protein -
  SDEG_RS00280 - 48259..48468 (+) 210 WP_014611912.1 hypothetical protein -
  SDEG_RS00285 (SDEG_0055) purB 48517..49809 (+) 1293 WP_003056595.1 adenylosuccinate lyase -
  SDEG_RS00290 (SDEG_0056) comR 49951..50862 (+) 912 WP_012766420.1 helix-turn-helix domain-containing protein Regulator
  SDEG_RS11265 comS 50949..51044 (+) 96 WP_198455558.1 quorum-sensing system DWW-type pheromone Regulator
  SDEG_RS00295 (SDEG_0057) ruvB 51097..52095 (+) 999 WP_003061489.1 Holliday junction branch migration DNA helicase RuvB -
  SDEG_RS00300 (SDEG_0058) - 52230..52661 (+) 432 WP_012766422.1 low molecular weight protein-tyrosine-phosphatase -
  SDEG_RS00305 (SDEG_0059) - 52690..53091 (+) 402 WP_003049089.1 MORN repeat-containing protein -
  SDEG_RS00310 (SDEG_0060) - 53088..54863 (+) 1776 WP_003059359.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3929.72 Da        Isoelectric Point: 10.1669

>NTDB_id=34418 SDEG_RS11265 WP_198455558.1 50949..51044(+) (comS) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MFKRYHYYFILTAMLAFKAAQMISQVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=34418 SDEG_RS11265 WP_198455558.1 50949..51044(+) (comS) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGTTCAAAAGATATCACTACTATTTTATACTTACTGCTATGTTAGCATTTAAAGCAGCTCAGATGATAAGTCAAGTGGA
TTGGTGGCGTTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

61.29

100

0.613
  comS Streptococcus pyogenes MGAS315

38.71

100

0.387

Multiple sequence alignment