Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | EWI30_RS15370 | Genome accession | NZ_CP035738 |
| Coordinates | 3122848..3123627 (+) | Length | 259 a.a. |
| NCBI ID | WP_129996234.1 | Uniprot ID | - |
| Organism | Enterobacter cloacae strain CZ-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3117848..3128627
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EWI30_RS15335 (EWI30_15335) | gspG | 3118485..3118922 (+) | 438 | WP_129996227.1 | type II secretion system major pseudopilin GspG | - |
| EWI30_RS15340 (EWI30_15340) | - | 3118919..3119437 (+) | 519 | WP_129996228.1 | GspH/FimT family pseudopilin | - |
| EWI30_RS15345 (EWI30_15345) | gspI | 3119434..3119796 (+) | 363 | WP_129996229.1 | type II secretion system minor pseudopilin GspI | - |
| EWI30_RS15350 (EWI30_15350) | gspJ | 3119793..3120368 (+) | 576 | WP_129996230.1 | type II secretion system minor pseudopilin GspJ | - |
| EWI30_RS15355 (EWI30_15355) | - | 3120365..3121246 (+) | 882 | WP_129996231.1 | type II secretion system protein GspK | - |
| EWI30_RS15360 (EWI30_15360) | gspL | 3121258..3122397 (+) | 1140 | WP_129996232.1 | type II secretion system protein GspL | - |
| EWI30_RS15365 (EWI30_15365) | gspM | 3122454..3122858 (+) | 405 | WP_242514461.1 | type II secretion system protein GspM | - |
| EWI30_RS15370 (EWI30_15370) | pilD | 3122848..3123627 (+) | 780 | WP_129996234.1 | A24 family peptidase | Machinery gene |
| EWI30_RS15375 (EWI30_15375) | gspS | 3123628..3124020 (-) | 393 | WP_129996235.1 | type II secretion system pilot lipoprotein GspS | - |
| EWI30_RS15380 (EWI30_15380) | gbpA | 3124249..3125667 (+) | 1419 | WP_129996236.1 | N-acetylglucosamine-binding protein GbpA | - |
| EWI30_RS15385 (EWI30_15385) | - | 3126763..3127623 (-) | 861 | WP_129996237.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28630.56 Da Isoelectric Point: 9.5163
>NTDB_id=344161 EWI30_RS15370 WP_129996234.1 3122848..3123627(+) (pilD) [Enterobacter cloacae strain CZ-1]
MSANPHLLLMAVLGLCVGSLLNVVVYRLPRMMSQQESGQFSLWWPRSHCPQCKTTIRWRDNIPLLSWLLLRGRCRHCVTA
IGWRYPLTELVALLITLLVMLLIPPGNALFAALLLGWMLLALSLIDYDHQLLPDNLTLPLLWSGLLFQLTGGTVSLADAV
VGAMVGYLSLWLLYWFFRLFTGKEAIGYGDFKLLAALGAWLGWMALPSLLLMTALAGIVITLAAKLIARRPLSAPLPFGP
LLSIAGWTLFLRQAIEGGV
MSANPHLLLMAVLGLCVGSLLNVVVYRLPRMMSQQESGQFSLWWPRSHCPQCKTTIRWRDNIPLLSWLLLRGRCRHCVTA
IGWRYPLTELVALLITLLVMLLIPPGNALFAALLLGWMLLALSLIDYDHQLLPDNLTLPLLWSGLLFQLTGGTVSLADAV
VGAMVGYLSLWLLYWFFRLFTGKEAIGYGDFKLLAALGAWLGWMALPSLLLMTALAGIVITLAAKLIARRPLSAPLPFGP
LLSIAGWTLFLRQAIEGGV
Nucleotide
Download Length: 780 bp
>NTDB_id=344161 EWI30_RS15370 WP_129996234.1 3122848..3123627(+) (pilD) [Enterobacter cloacae strain CZ-1]
ATGAGCGCTAATCCCCACTTACTGTTAATGGCCGTCCTGGGGCTGTGCGTCGGCAGCCTGCTTAACGTCGTCGTCTACCG
ACTGCCCCGCATGATGTCACAGCAGGAAAGCGGGCAGTTCTCGCTGTGGTGGCCCCGCTCGCACTGCCCGCAGTGCAAAA
CGACGATACGCTGGCGGGATAATATTCCCCTTCTGAGCTGGCTGCTGCTGCGCGGAAGATGCCGCCACTGTGTAACCGCC
ATCGGATGGCGCTATCCGCTCACAGAGCTTGTCGCACTTTTAATCACGTTGCTGGTGATGCTGTTGATCCCCCCCGGAAA
CGCGCTTTTTGCCGCGTTGCTCCTGGGATGGATGCTGCTGGCGCTGTCACTGATTGATTACGACCACCAACTTCTGCCAG
ACAACCTGACGCTTCCGCTCCTTTGGTCAGGCCTGCTGTTTCAGTTGACTGGCGGTACTGTTTCACTGGCTGATGCAGTC
GTGGGTGCGATGGTGGGCTATCTGAGTCTATGGTTGCTGTACTGGTTTTTCCGCCTGTTCACCGGGAAAGAGGCTATCGG
CTACGGTGACTTTAAACTGCTGGCGGCACTCGGCGCATGGCTGGGCTGGATGGCTCTACCTTCGCTTTTATTGATGACCG
CGTTGGCGGGCATTGTGATTACACTGGCAGCAAAACTTATCGCCCGGCGTCCACTGAGCGCCCCCCTGCCTTTTGGCCCA
CTGCTGTCAATAGCTGGCTGGACGCTTTTTCTCCGGCAGGCCATAGAGGGGGGAGTGTGA
ATGAGCGCTAATCCCCACTTACTGTTAATGGCCGTCCTGGGGCTGTGCGTCGGCAGCCTGCTTAACGTCGTCGTCTACCG
ACTGCCCCGCATGATGTCACAGCAGGAAAGCGGGCAGTTCTCGCTGTGGTGGCCCCGCTCGCACTGCCCGCAGTGCAAAA
CGACGATACGCTGGCGGGATAATATTCCCCTTCTGAGCTGGCTGCTGCTGCGCGGAAGATGCCGCCACTGTGTAACCGCC
ATCGGATGGCGCTATCCGCTCACAGAGCTTGTCGCACTTTTAATCACGTTGCTGGTGATGCTGTTGATCCCCCCCGGAAA
CGCGCTTTTTGCCGCGTTGCTCCTGGGATGGATGCTGCTGGCGCTGTCACTGATTGATTACGACCACCAACTTCTGCCAG
ACAACCTGACGCTTCCGCTCCTTTGGTCAGGCCTGCTGTTTCAGTTGACTGGCGGTACTGTTTCACTGGCTGATGCAGTC
GTGGGTGCGATGGTGGGCTATCTGAGTCTATGGTTGCTGTACTGGTTTTTCCGCCTGTTCACCGGGAAAGAGGCTATCGG
CTACGGTGACTTTAAACTGCTGGCGGCACTCGGCGCATGGCTGGGCTGGATGGCTCTACCTTCGCTTTTATTGATGACCG
CGTTGGCGGGCATTGTGATTACACTGGCAGCAAAACTTATCGCCCGGCGTCCACTGAGCGCCCCCCTGCCTTTTGGCCCA
CTGCTGTCAATAGCTGGCTGGACGCTTTTTCTCCGGCAGGCCATAGAGGGGGGAGTGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
49.416 |
99.228 |
0.49 |
| pilD | Neisseria gonorrhoeae MS11 |
45.736 |
99.614 |
0.456 |
| pilD | Vibrio campbellii strain DS40M4 |
44.788 |
100 |
0.448 |
| pilD | Acinetobacter nosocomialis M2 |
44.186 |
99.614 |
0.44 |
| pilD | Acinetobacter baumannii D1279779 |
43.411 |
99.614 |
0.432 |