Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GCU76_RS04205 Genome accession   NZ_CP045425
Coordinates   816880..817596 (+) Length   238 a.a.
NCBI ID   WP_017697569.1    Uniprot ID   -
Organism   Bacillus subtilis strain JAAA     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 811880..822596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS04175 - 811902..812039 (+) 138 WP_152425395.1 hypothetical protein -
  GCU76_RS04180 yflB 812058..812450 (+) 393 WP_152425667.1 DUF1992 domain-containing protein -
  GCU76_RS04185 - 812575..812811 (+) 237 Protein_769 sodium:alanine symporter family protein -
  GCU76_RS04190 - 812760..813494 (-) 735 Protein_770 spore germination protein -
  GCU76_RS04195 treP 813688..815100 (+) 1413 WP_017697567.1 PTS system trehalose-specific EIIBC component -
  GCU76_RS04200 treC 815171..816859 (+) 1689 WP_017697568.1 alpha,alpha-phosphotrehalase -
  GCU76_RS04205 treR 816880..817596 (+) 717 WP_017697569.1 trehalose operon repressor Regulator
  GCU76_RS04210 hypO 817736..818401 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27793.73 Da        Isoelectric Point: 7.5417

>NTDB_id=344161 GCU76_RS04205 WP_017697569.1 816880..817596(+) (treR) [Bacillus subtilis strain JAAA]
MKVNKFITIYKDIAQQIEGGRWKAGEILPSEHELTAQYGTSRETVRKALHMHAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=344161 GCU76_RS04205 WP_017697569.1 816880..817596(+) (treR) [Bacillus subtilis strain JAAA]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGGGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCACGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAACTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGGAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416

Multiple sequence alignment