Detailed information NTG0344107

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EPB55_RS06920
• Genome accession: NZ_CP035731
• Coordinates: 1364081..1365073 (-)
• Length: 330 a.a.
• NCBI ID: WP_011079521.1
• Uniprot ID: A0A3Q0L3U7
• Organism: Vibrio vulnificus strain 2142-77
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1359081..1370073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB55_RS06900	recX	1359108..1359569 (-)	462	WP_103277992.1	recombination regulator RecX	-
EPB55_RS06905	recA	1359674..1360723 (-)	1050	WP_011079524.1	recombinase RecA	Machinery gene
EPB55_RS06910	pncC	1360857..1361360 (-)	504	WP_039554640.1	nicotinamide-nucleotide amidase	-
EPB55_RS06915	mutS	1361444..1364005 (+)	2562	WP_039554641.1	DNA mismatch repair protein MutS	-
EPB55_RS06920	rpoS	1364081..1365073 (-)	993	WP_011079521.1	RNA polymerase sigma factor RpoS	Regulator
EPB55_RS06925	-	1365154..1366050 (-)	897	WP_011079520.1	peptidoglycan DD-metalloendopeptidase family protein	-
EPB55_RS06930	-	1366094..1366720 (-)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EPB55_RS06935	surE	1366723..1367490 (-)	768	WP_011079518.1	5'/3'-nucleotidase SurE	-
EPB55_RS06940	truD	1367496..1368539 (-)	1044	WP_103277991.1	tRNA pseudouridine(13) synthase TruD	-
EPB55_RS06945	ispF	1368575..1369051 (-)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EPB55_RS06950	ispD	1369048..1369761 (-)	714	WP_045622076.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EPB55_RS06955	ftsB	1369761..1370042 (-)	282	WP_011079514.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38054.13 Da
• Isoelectric Point: 4.5114

>NTDB_id=344107 EPB55_RS06920 WP_011079521.1 1364081..1365073(-) (rpoS) [Vibrio vulnificus strain 2142-77]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVKLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=344107 EPB55_RS06920 WP_011079521.1 1364081..1365073(-) (rpoS) [Vibrio vulnificus strain 2142-77]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCAAACTTCGCGAGGAGTTTGATGCCAGCAACAAGAGCTTAGACG
CGACGCAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTGGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGCTCTGTCGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCAGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAAGTTGGGCAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

3D structure

• AlphaFold DB: A0A3Q0L3U7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.899	100	0.836