Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   EPB55_RS06695 Genome accession   NZ_CP035731
Coordinates   1319916..1320533 (+) Length   205 a.a.
NCBI ID   WP_011079558.1    Uniprot ID   Q7MHU7
Organism   Vibrio vulnificus strain 2142-77     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314916..1325533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS06675 - 1315230..1316153 (-) 924 WP_130308965.1 ABC transporter ATP-binding protein -
  EPB55_RS06680 - 1316319..1317989 (-) 1671 WP_013571147.1 SulP family inorganic anion transporter -
  EPB55_RS06685 can 1318231..1318899 (+) 669 WP_080538706.1 carbonate dehydratase -
  EPB55_RS06690 hpt 1318994..1319524 (-) 531 WP_011079559.1 hypoxanthine phosphoribosyltransferase -
  EPB55_RS06695 opaR 1319916..1320533 (+) 618 WP_011079558.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  EPB55_RS06700 lpdA 1320666..1322093 (-) 1428 WP_011079557.1 dihydrolipoyl dehydrogenase -
  EPB55_RS06705 aceF 1322351..1324243 (-) 1893 WP_130194863.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23717.02 Da        Isoelectric Point: 6.1461

>NTDB_id=344099 EPB55_RS06695 WP_011079558.1 1319916..1320533(+) (opaR) [Vibrio vulnificus strain 2142-77]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHAKENIANITNAMIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPE
DLANLFHGICYSLFVQANRTNNTAELSKLVSSYLDMLCIYKREHE

Nucleotide


Download         Length: 618 bp        

>NTDB_id=344099 EPB55_RS06695 WP_011079558.1 1319916..1320533(+) (opaR) [Vibrio vulnificus strain 2142-77]
ATGGACTCAATCGCAAAGAGACCGCGAACTCGCTTATCTCCGCTAAAACGTAAACAGCAGCTCATGGAAATTGCACTGGA
AGTGTTTGCTCGTCGTGGCATTGGCCGCGGTGGTCACGCAGACATCGCTGAAATTGCGCAAGTTTCTGTGGCGACCGTCT
TCAACTACTTCCCAACTCGCGAAGATCTTGTAGACGAAGTGCTTAACCATGTCGTTCGTCAGTTTTCTAATTTCCTATCT
GACAACATCGATTTGGATCTTCACGCTAAAGAAAACATCGCCAACATCACCAACGCAATGATTGAGCTTGTGGTGCAAGA
CAATCACTGGTTGAAAGTTTGGTTCGAGTGGAGTGCGTCGACGCGTGATGAAGTTTGGCCTCTGTTTGTCACCACCAACC
GTACTAATCAATTGCTGGTACAAAACATGTTCATCAAAGCCATTGAGCGTGGTGAAGTGTGTGACCAACACAACCCAGAA
GATTTGGCGAACTTGTTCCATGGCATTTGTTACTCGCTGTTTGTTCAAGCAAACCGTACCAACAATACCGCAGAGCTCAG
CAAACTGGTCAGCAGCTACTTAGACATGCTATGCATCTATAAACGCGAGCACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.157

99.512

0.917
  hapR Vibrio cholerae C6706

72.864

97.073

0.707
  hapR Vibrio cholerae strain A1552

72.864

97.073

0.707

Multiple sequence alignment