Detailed information NTG0343965

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EPB54_RS14435
• Genome accession: NZ_CP035701
• Coordinates: 2873340..2874329 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 2012AW-0154
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2868340..2879329

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB54_RS14420	recA	2868889..2869932 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
EPB54_RS14425	pncC	2870133..2870615 (-)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
EPB54_RS14430	mutS	2870700..2873261 (+)	2562	WP_062866927.1	DNA mismatch repair protein MutS	-
EPB54_RS14435	rpoS	2873340..2874329 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
EPB54_RS14440	-	2874410..2875333 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
EPB54_RS14445	-	2875348..2875974 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EPB54_RS14450	surE	2875974..2876750 (-)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
EPB54_RS14455	truD	2876750..2877793 (-)	1044	WP_154119935.1	tRNA pseudouridine(13) synthase TruD	-
EPB54_RS14460	ispF	2877840..2878316 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EPB54_RS14465	ispD	2878334..2879038 (-)	705	WP_020841271.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EPB54_RS14470	ftsB	2879040..2879321 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=343965 EPB54_RS14435 WP_005478537.1 2873340..2874329(-) (rpoS) [Vibrio parahaemolyticus strain 2012AW-0154]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=343965 EPB54_RS14435 WP_005478537.1 2873340..2874329(-) (rpoS) [Vibrio parahaemolyticus strain 2012AW-0154]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACTCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851