Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   EPB54_RS14200 Genome accession   NZ_CP035701
Coordinates   2828789..2829403 (+) Length   204 a.a.
NCBI ID   WP_025818581.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0154     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2823789..2834403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB54_RS14175 - 2824074..2824991 (-) 918 WP_024702450.1 ABC transporter ATP-binding protein -
  EPB54_RS14185 - 2825244..2826914 (-) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  EPB54_RS14190 can 2827198..2827866 (+) 669 WP_005462578.1 carbonate dehydratase -
  EPB54_RS14195 hpt 2827940..2828470 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  EPB54_RS14200 opaR 2828789..2829403 (+) 615 WP_025818581.1 transcriptional regulator OpaR Regulator
  EPB54_RS14205 lpdA 2829531..2830958 (-) 1428 WP_025818580.1 dihydrolipoyl dehydrogenase -
  EPB54_RS14210 aceF 2831227..2833113 (-) 1887 WP_021453621.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.98 Da        Isoelectric Point: 6.2937

>NTDB_id=343957 EPB54_RS14200 WP_025818581.1 2828789..2829403(+) (opaR) [Vibrio parahaemolyticus strain 2012AW-0154]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDKHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=343957 EPB54_RS14200 WP_025818581.1 2828789..2829403(+) (opaR) [Vibrio parahaemolyticus strain 2012AW-0154]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGACAAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

99.51

100

0.995
  hapR Vibrio cholerae C6706

72.727

97.059

0.706
  hapR Vibrio cholerae strain A1552

72.727

97.059

0.706

Multiple sequence alignment