Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   EPB57_RS20905 Genome accession   NZ_CP035700
Coordinates   2667916..2668530 (-) Length   204 a.a.
NCBI ID   WP_154205052.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2013V-1302     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2662916..2673530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB57_RS20895 aceF 2664182..2666074 (+) 1893 WP_005396678.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  EPB57_RS20900 lpdA 2666342..2667769 (+) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  EPB57_RS20905 opaR 2667916..2668530 (-) 615 WP_154205052.1 transcriptional regulator OpaR Regulator
  EPB57_RS20910 hpt 2668850..2669380 (+) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  EPB57_RS20915 can 2669459..2670127 (-) 669 WP_005379996.1 carbonate dehydratase -
  EPB57_RS20920 - 2670409..2672079 (+) 1671 WP_005379997.1 SulP family inorganic anion transporter -
  EPB57_RS20925 - 2672330..2673247 (+) 918 WP_005380000.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23639.92 Da        Isoelectric Point: 6.4042

>NTDB_id=343938 EPB57_RS20905 WP_154205052.1 2667916..2668530(-) (opaR) [Vibrio alginolyticus strain 2013V-1302]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKSEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=343938 EPB57_RS20905 WP_154205052.1 2667916..2668530(-) (opaR) [Vibrio alginolyticus strain 2013V-1302]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCCCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
TTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCGTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAAGTGAAGCGGAACTGAA
ACATCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.569

100

0.966
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711

Multiple sequence alignment