Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ET948_RS06515 Genome accession   NZ_CP035697
Coordinates   1393241..1393873 (-) Length   210 a.a.
NCBI ID   WP_078926043.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2409-02     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388241..1398873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET948_RS06505 aceF 1389605..1391488 (+) 1884 WP_154115276.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  ET948_RS06510 lpdA 1391742..1393169 (+) 1428 WP_078926042.1 dihydrolipoyl dehydrogenase -
  ET948_RS06515 opaR 1393241..1393873 (-) 633 WP_078926043.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  ET948_RS06520 hpt 1394215..1394745 (+) 531 WP_078926044.1 hypoxanthine phosphoribosyltransferase -
  ET948_RS06525 can 1394821..1395489 (-) 669 WP_078926045.1 carbonate dehydratase -
  ET948_RS06530 - 1395819..1396742 (+) 924 WP_078926046.1 ABC transporter ATP-binding protein -
  ET948_RS06535 - 1396742..1397512 (+) 771 WP_078926047.1 ABC transporter permease -
  ET948_RS06540 panC 1397668..1398549 (-) 882 WP_078926048.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24217.79 Da        Isoelectric Point: 5.6489

>NTDB_id=343878 ET948_RS06515 WP_078926043.1 1393241..1393873(-) (opaR) [Vibrio cincinnatiensis strain 2409-02]
MDASIEKRPRTRLSPQKRKQQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTFVVRQFSNFL
TDQIDLDLDAKENMHNIASAMVNLAIDDCYWLKVWFEWSASTREEVWPLFVSSNKTNQLLIRNIFVKAIERGEVCAQLDA
ENLAMLFHGVCYSLFVQANRVRDEQKVCQLVNHYLDMLCIYNREHLSIAS

Nucleotide


Download         Length: 633 bp        

>NTDB_id=343878 ET948_RS06515 WP_078926043.1 1393241..1393873(-) (opaR) [Vibrio cincinnatiensis strain 2409-02]
ATGGACGCATCTATTGAGAAACGCCCCAGAACACGGCTTTCTCCGCAAAAACGTAAACAACAACTCATGGAAATCGCACT
GGAAGTGTTTGCCAAACGAGGGATTGGTCGTGGAGGGCATGCAGATATCGCTGAAATTGCCCAAGTATCTGTGGCAACCG
TCTTTAACTACTTTCCTACTCGGGAAGATTTGGTGGACGATGTACTAACCTTTGTGGTTCGTCAATTCTCTAACTTTCTC
ACCGATCAGATTGATCTTGACCTCGATGCTAAAGAAAATATGCACAACATTGCTTCAGCAATGGTAAATCTGGCTATTGA
TGATTGTTATTGGCTAAAAGTATGGTTTGAATGGAGCGCTTCAACTCGAGAGGAAGTCTGGCCTTTATTTGTCTCGAGCA
ATAAAACGAACCAGTTATTGATTAGAAATATTTTTGTCAAAGCTATCGAGCGTGGTGAAGTTTGTGCTCAACTTGATGCC
GAAAATTTAGCGATGCTATTTCACGGCGTTTGTTATTCTCTCTTTGTACAAGCCAACCGAGTGCGTGATGAACAAAAAGT
CTGCCAGTTAGTCAACCATTATTTAGATATGCTGTGCATCTATAACCGAGAACATTTATCTATCGCCTCTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

78.218

96.19

0.752
  hapR Vibrio cholerae C6706

76.119

95.714

0.729
  hapR Vibrio cholerae strain A1552

76.119

95.714

0.729

Multiple sequence alignment