Detailed information NTG0343856

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ET948_RS01655
• Genome accession: NZ_CP035697
• Coordinates: 365099..366088 (-)
• Length: 329 a.a.
• NCBI ID: WP_154114822.1
• Uniprot ID: -
• Organism: Vibrio cincinnatiensis strain 2409-02
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 360099..371088

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ET948_RS01640	cysP	360122..361123 (-)	1002	WP_154114819.1	thiosulfate ABC transporter substrate-binding protein CysP	-
ET948_RS01645	cysM	361339..362229 (+)	891	WP_154114820.1	cysteine synthase CysM	-
ET948_RS01650	mutS	362453..365035 (+)	2583	WP_154114821.1	DNA mismatch repair protein MutS	-
ET948_RS01655	rpoS	365099..366088 (-)	990	WP_154114822.1	RNA polymerase sigma factor RpoS	Regulator
ET948_RS01660	nlpD	366155..367051 (-)	897	WP_407834926.1	murein hydrolase activator NlpD	-
ET948_RS01665	-	367102..367728 (-)	627	WP_078927349.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ET948_RS01670	surE	367733..368488 (-)	756	WP_078927348.1	5'/3'-nucleotidase SurE	-
ET948_RS01675	truD	368481..369527 (-)	1047	WP_154114824.1	tRNA pseudouridine(13) synthase TruD	-
ET948_RS01680	ispF	369573..370052 (-)	480	WP_078927346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ET948_RS01685	ispD	370049..370750 (-)	702	WP_154114825.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ET948_RS01690	ftsB	370750..371031 (-)	282	WP_078927364.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37781.67 Da
• Isoelectric Point: 4.5903

>NTDB_id=343856 ET948_RS01655 WP_154114822.1 365099..366088(-) (rpoS) [Vibrio cincinnatiensis strain 2409-02]
MSISNTTVTKVEDFDFDPEVFNALESDSVIEQPPTHTNLREEYDASSKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDDAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQRLDHEPTAEEIAAELDKPVDDVNKMLRLNERISSVDTPIGGDGDKALLDILPDANNSD
PEFSIQDDDIRDSLVNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILLKQGLNME
ALFTIEHDG

Nucleotide

• Length: 990 bp

>NTDB_id=343856 ET948_RS01655 WP_154114822.1 365099..366088(-) (rpoS) [Vibrio cincinnatiensis strain 2409-02]
ATGAGTATCAGCAATACAACAGTAACTAAAGTCGAAGATTTTGATTTTGACCCCGAGGTTTTCAATGCTCTAGAGTCTGA
CTCTGTGATTGAACAGCCACCTACCCACACTAACCTCCGAGAAGAGTATGACGCATCAAGCAAAAGCTTAGATGCAACAC
AAATGTACCTAAGTGAAATCGGTTTTTCGCCTTTGCTGACGGCTGAAGAAGAAGTTCTCTACGCACGGCGAGCATTGCGG
GGCGATGATGCCGCTCGTAAACGTATGATTGAAAGTAACCTACGGTTAGTGGTGAAAATTTCCCGCCGCTACAGTAACCG
AGGGCTCGCTTTATTGGATTTAATTGAAGAAGGTAACTTAGGGTTAATCCGAGCGGTAGAAAAATTTGATCCAGAACGTG
GTTTTCGTTTTTCAACCTATGCAACTTGGTGGATTCGGCAAACGATAGAACGTGCATTGATGAACCAAACTCGTACGATC
CGTCTACCCATTCATGTGGTTAAAGAGCTGAATATTTACTTACGTACAGCACGTGAACTTTCCCAACGTTTGGATCATGA
ACCGACCGCAGAAGAAATTGCGGCAGAACTGGATAAACCCGTGGATGATGTCAATAAAATGCTGCGCTTAAATGAACGTA
TTAGTTCGGTAGACACCCCCATTGGTGGGGATGGAGACAAAGCGTTGCTGGATATTTTACCGGATGCAAATAATTCTGAT
CCTGAATTTTCGATACAAGATGATGATATTAGAGATTCGCTGGTTAACTGGCTAGATGAACTTAATCCGAAACAAAAAGA
GGTGCTTGCGCGGCGTTTCGGTTTACTGGGCTATGAACCATCAACTCTTGAAGAAGTTGGGAGAGAAATAAGCCTAACTC
GTGAGCGAGTGAGGCAGATCCAAGTTGAGGGGCTGCGCCGTTTACGCGAAATCTTACTCAAACAAGGGTTGAATATGGAA
GCTTTGTTTACTATTGAGCATGATGGATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	85.97	100	0.875