Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GAG93_RS10255 Genome accession   NZ_CP045190
Coordinates   1917975..1918631 (+) Length   218 a.a.
NCBI ID   WP_023281297.1    Uniprot ID   -
Organism   Escherichia coli strain NT1F31     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912975..1923631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAG93_RS10225 (GAG93_10575) dcyD 1913855..1914841 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  GAG93_RS10230 (GAG93_10580) tcyL 1914856..1915524 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  GAG93_RS10235 (GAG93_10585) tcyN 1915521..1916273 (+) 753 WP_122056923.1 L-cystine ABC transporter ATP-binding protein TcyN -
  GAG93_RS10240 (GAG93_10590) sdiA 1916503..1917225 (+) 723 WP_001154267.1 transcriptional regulator SdiA -
  GAG93_RS10245 (GAG93_10595) yecF 1917292..1917516 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  GAG93_RS10250 (GAG93_10600) yecU 1917503..1917679 (-) 177 WP_001307856.1 protein YecU -
  GAG93_RS10255 (GAG93_10605) letA 1917975..1918631 (+) 657 WP_023281297.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GAG93_RS10260 (GAG93_10610) uvrC 1918628..1920460 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  GAG93_RS10265 (GAG93_10615) pgsA 1920517..1921065 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GAG93_RS10285 (GAG93_10640) - 1921773..1922516 (-) 744 WP_042201988.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23936.71 Da        Isoelectric Point: 6.9614

>NTDB_id=343769 GAG93_RS10255 WP_023281297.1 1917975..1918631(+) (letA) [Escherichia coli strain NT1F31]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEVSCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=343769 GAG93_RS10255 WP_023281297.1 1917975..1918631(+) (letA) [Escherichia coli strain NT1F31]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGTATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGCCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486