Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   EWA65_RS15075 Genome accession   NZ_CP035689
Coordinates   433530..434699 (+) Length   389 a.a.
NCBI ID   WP_055030498.1    Uniprot ID   -
Organism   Vibrio metoecus strain 08-2459     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 428530..439699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS15060 - 429404..430393 (-) 990 WP_000610710.1 CobW family GTP-binding protein -
  EWA65_RS15065 clcA 430861..432267 (+) 1407 WP_055030499.1 H(+)/Cl(-) exchange transporter ClcA -
  EWA65_RS15070 - 432371..433333 (+) 963 WP_055028175.1 TDT family transporter -
  EWA65_RS15075 cqsA 433530..434699 (+) 1170 WP_055030498.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EWA65_RS15080 cqsS 434749..436797 (-) 2049 WP_081018722.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43617.82 Da        Isoelectric Point: 6.1813

>NTDB_id=343721 EWA65_RS15075 WP_055030498.1 433530..434699(+) (cqsA) [Vibrio metoecus strain 08-2459]
MNRPQLPDFIQDKISHYIENYFDINKNGKHLVLGKHASSDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPLLEKRLAQFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGIRYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTIGTIAPLAELVKISQEFGCALVVDESHSLGTHGPKGAGLLAELNLTSQVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIECADIRRDHLERMAKKLRIGLTQLGITIRSESQIIGL
ETGDERNTEKVRDFLENNGVFGSVFCRPATSKNKNIIRLSLNSDVTEEEISKIIEICSDAVKCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=343721 EWA65_RS15075 WP_055030498.1 433530..434699(+) (cqsA) [Vibrio metoecus strain 08-2459]
ATGAATAGACCACAACTTCCTGATTTTATTCAGGATAAGATAAGTCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGTAAACACCTCGTATTAGGTAAACATGCCAGCAGTGATGACATTATTTTGCAAAGTAATGACTATTTAGCGTTAGCAA
ATCATCCATTGATTAAAGCTCGCTTAGCTAAATCATTACTGGAAGAGCAACAAAGTTTATTTATGTCAGCATCATTTTTA
CAAAATGATTATGACAAACCGTTGCTTGAAAAACGCTTAGCCCAGTTCACGGGGTTTGATGAGTGTTTATTATCTCAATC
AGGTTGGAACGCGAATGTGGGTTTACTGCAAACCATCTGCCAACCCAATACGAATGTTTACATCGATTTCTTTGCTCACA
TGTCATTATGGGAAGGAATACGCTACGCCAATGCTCAGGCGCACCCTTTTATGCATAACAACTGTGACCACTTGCGCATG
CTGATTCAACGTCATGGGCCAGGAATCATCGTGGTTGACTCGATTTACAGCACCATTGGAACCATTGCTCCATTAGCTGA
GTTGGTAAAAATTAGCCAAGAGTTTGGTTGCGCTTTAGTGGTGGATGAGTCCCACTCGCTAGGCACACATGGACCTAAAG
GTGCAGGATTATTGGCTGAATTGAACCTCACCTCACAGGTTCATTTTATGACAGCCAGTTTGGCGAAAACTTTTGCTTAT
CGGGCTGGAGCCATCTGGTGCAATAATGAGGTTAATCGATGTGTTCCTTTTATTAGTTATCCCGCTATATTCAGTTCAAC
GTTACTACCCTATGAAGCAGCTGGATTAGAAACCACATTAGAGATTATTGAATGTGCCGATATTAGACGGGATCACTTAG
AACGTATGGCAAAAAAATTACGGATTGGTTTAACCCAATTAGGGATAACGATCCGTAGTGAAAGCCAGATTATTGGCTTA
GAAACCGGTGATGAGAGAAATACGGAAAAAGTTCGTGACTTTTTAGAAAATAACGGCGTGTTTGGTTCTGTATTTTGTCG
TCCTGCGACCTCAAAAAATAAGAATATTATTCGCTTATCTCTCAATAGTGATGTAACTGAAGAAGAGATTTCAAAAATAA
TTGAAATTTGCTCTGACGCAGTGAAATGTGGTGATTTTTATTTTCGATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

91.517

100

0.915

Multiple sequence alignment