Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   EWA65_RS15080 Genome accession   NZ_CP035689
Coordinates   434749..436797 (-) Length   682 a.a.
NCBI ID   WP_081018722.1    Uniprot ID   -
Organism   Vibrio metoecus strain 08-2459     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 429749..441797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS15065 clcA 430861..432267 (+) 1407 WP_055030499.1 H(+)/Cl(-) exchange transporter ClcA -
  EWA65_RS15070 - 432371..433333 (+) 963 WP_055028175.1 TDT family transporter -
  EWA65_RS15075 cqsA 433530..434699 (+) 1170 WP_055030498.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EWA65_RS15080 cqsS 434749..436797 (-) 2049 WP_081018722.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  EWA65_RS15085 - 436909..439950 (-) 3042 WP_154139220.1 AAA family ATPase -
  EWA65_RS15090 - 439952..441091 (-) 1140 WP_154139221.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77835.75 Da        Isoelectric Point: 5.1220

>NTDB_id=343722 EWA65_RS15080 WP_081018722.1 434749..436797(-) (cqsS) [Vibrio metoecus strain 08-2459]
MDVIKKVYQYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQVYENLGLRCAAAVLFAGLAFRGSFPKKWQRYMPHYFLLTIG
FCLPFFFCFMMLMNDWSTIWAMSFMASIFLHILLVHDTKVMALQAIFSVLMAYLAVYGFTDFRPSTLIEWPYIPVFLFTY
VFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVIRTMIPKPQAAAQAAYPLDAQELDLLHQILNEADD
VIYSGNNTIDLLLTSIDENRVSTASFKKYSAADVIEKALKTFPYKNVADQHAVQLEVIQPFDFFGSDTLLSYALFNLLKN
AFYYQKEQFSVRIQIEQSDECNLIKVRDNGVGIASEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGSIRCFSQQGE
WTEFVLAFPRYDSDVVQDIKADLLKSKSLIYIGSNQAIVRELNQLALEDEFKFTAISAVQAVRRQDYEFEFDLILLDLDE
ATAQGELLPKLEGTLSFTEGCIGYVYDPAKEYAVNINRYLHIQPISIHAVLRKPRSIIDRLLFEQDSLLMNRNAIPVQKS
RHERRILVVDDNQSIRTFTSILLEQQGYEVIQANDGSEVLTHMDEHTIDLVLMDIEMPNVGGLEATHLIRSSDRAYKNIP
IIGYTGDNSPKTLALIQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=343722 EWA65_RS15080 WP_081018722.1 434749..436797(-) (cqsS) [Vibrio metoecus strain 08-2459]
ATGGATGTGATAAAGAAAGTTTACCAGTACGCAGAACCCAATCTTTCTTTAGTGGGATGGATGGGGATGCTTGGCTTTCC
AGCCTACTATTTCATTTGGGAATACTGGTTTCCACAAGTCTATGAGAACTTAGGTTTGCGCTGTGCTGCTGCAGTCTTGT
TCGCAGGGCTGGCGTTTCGTGGCTCATTCCCCAAAAAATGGCAGCGCTACATGCCGCACTATTTTTTGTTGACCATAGGC
TTCTGTTTGCCTTTTTTCTTTTGTTTCATGATGTTAATGAACGATTGGTCAACGATTTGGGCTATGTCGTTCATGGCATC
GATATTTCTGCACATCTTACTTGTGCATGATACAAAAGTGATGGCACTACAAGCTATCTTCTCTGTGTTGATGGCTTACC
TTGCAGTGTATGGTTTTACGGATTTTCGTCCCTCAACCTTGATTGAGTGGCCGTATATTCCAGTTTTTTTGTTTACTTAT
GTTTTTGGCAATCTGTGTTTCTTTCGTAATCAGATTTCTCATGAAACCAAAGTCTCCATTGCTAAAACCTTTGGGGCTGG
GATTGCGCATGAAATGCGTAATCCACTCAGTGCACTCAAAACGTCTATCGATGTTATTCGGACCATGATCCCAAAACCAC
AAGCGGCGGCTCAAGCTGCATACCCGCTGGATGCGCAAGAGCTGGATCTATTACATCAGATTTTGAATGAAGCCGATGAT
GTTATCTATTCTGGAAATAACACCATTGATTTATTGCTGACGTCGATCGATGAAAACCGTGTTTCTACCGCGAGTTTTAA
AAAATACTCTGCAGCCGATGTTATCGAAAAAGCTCTGAAAACGTTCCCGTATAAAAATGTGGCGGATCAGCACGCTGTTC
AGCTTGAAGTTATCCAACCGTTTGATTTTTTTGGCAGTGATACGTTATTGAGTTATGCATTGTTTAACTTATTGAAAAAT
GCCTTTTATTACCAAAAAGAACAATTCTCTGTGCGGATTCAGATTGAACAAAGTGACGAGTGTAACCTGATTAAAGTTCG
TGATAACGGTGTCGGGATCGCATCTGAAATGCTGGAAGATATTTTCCGTGATTTTTACACTTTCGGTAAAAATGGCAGCT
ATGGGCTTGGCTTACCATTTTGTCGAAAAGTGATGACGGCTTTTGGTGGCAGTATTCGTTGTTTTTCACAGCAAGGTGAA
TGGACGGAGTTTGTACTGGCGTTCCCTCGTTACGATTCTGATGTGGTACAAGACATTAAAGCGGATTTATTAAAGTCTAA
ATCTTTGATTTATATTGGGTCAAACCAAGCGATTGTTCGAGAGCTGAATCAATTAGCGCTAGAAGATGAGTTTAAATTCA
CGGCTATTTCTGCTGTACAGGCGGTGAGGCGACAAGATTACGAATTTGAGTTTGATCTGATTTTGCTGGATTTGGATGAG
GCGACAGCGCAAGGCGAATTACTTCCTAAGCTGGAAGGCACATTAAGTTTTACAGAAGGCTGCATTGGCTATGTGTATGA
TCCGGCCAAAGAGTATGCCGTTAATATCAATCGATACTTACATATTCAACCGATAAGTATCCATGCGGTGCTTCGTAAAC
CTAGAAGTATCATAGATCGTTTATTGTTTGAACAAGATTCACTGTTGATGAATCGTAACGCGATTCCGGTGCAGAAGAGT
CGTCATGAGCGGCGAATTCTGGTGGTGGATGACAATCAATCCATCCGCACATTTACGTCTATCCTACTTGAACAGCAAGG
ATACGAAGTAATACAAGCGAATGATGGCAGCGAAGTCCTCACTCATATGGATGAACACACGATTGATCTGGTATTGATGG
ATATTGAAATGCCGAATGTGGGTGGATTAGAGGCCACTCACTTAATTCGCAGCTCTGATCGCGCTTATAAAAACATCCCA
ATTATAGGTTATACCGGTGATAACAGCCCGAAAACATTAGCGTTGATACAGACGTCGGGGATGAATGATTTTATTGTTAA
ACCCGCCGATCGTGATGTATTACTCAATAAAGTTGCAGCGTGGGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

87.977

100

0.88

Multiple sequence alignment