Detailed information NTG0343720

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: GB851_RS07590
• Genome accession: NZ_CP045141
• Coordinates: 1460265..1462841 (+)
• Length: 858 a.a.
• NCBI ID: WP_032133984.1
• Uniprot ID: -
• Organism: Kingella kingae strain F41215CHC
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1455265..1467841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GB851_RS07560 (GB851_07760)	gloA	1456173..1456574 (-)	402	WP_003787492.1	lactoylglutathione lyase	-
GB851_RS07565 (GB851_07765)	-	1456687..1457646 (+)	960	WP_038311523.1	beta-ketoacyl-ACP synthase III	-
GB851_RS07570 (GB851_07770)	htpX	1457818..1458657 (+)	840	WP_003787488.1	protease HtpX	-
GB851_RS07575 (GB851_07775)	radC	1458716..1459405 (-)	690	WP_003791157.1	DNA repair protein RadC	Machinery gene
GB851_RS07580 (GB851_07780)	-	1459479..1459913 (-)	435	WP_019389565.1	META domain-containing protein	-
GB851_RS07590 (GB851_07790)	clpC	1460265..1462841 (+)	2577	WP_032133984.1	ATP-dependent chaperone ClpB	Regulator
GB851_RS07595 (GB851_07795)	-	1462978..1463865 (+)	888	WP_164538265.1	transferrin-binding protein-like solute binding protein	-
GB851_RS07600 (GB851_07800)	-	1463943..1464428 (-)	486	WP_223877596.1	DUF4149 domain-containing protein	-
GB851_RS07605 (GB851_07805)	-	1464519..1465304 (-)	786	WP_003787475.1	cytochrome c1	-
GB851_RS07610 (GB851_07810)	-	1465318..1466670 (-)	1353	WP_003791167.1	cytochrome bc complex cytochrome b subunit	-
GB851_RS07615 (GB851_07815)	petA	1466688..1467272 (-)	585	WP_038304023.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 858 a.a.
• Molecular weight: 94574.69 Da
• Isoelectric Point: 5.1773

>NTDB_id=343720 GB851_RS07590 WP_032133984.1 1460265..1462841(+) (clpC) [Kingella kingae strain F41215CHC]
MRYDKLTSKFQSILQTAQSSAMAADHAYVEAAHVVQALLDDHENGMAALLVQAGGNVSQIKQKVQAALSALPKISGNGGD
ISASRELQNALNLMDKAAVKRGDTYIASELFLLGLIQENGATGKILKDAGVTEAKLTQAIEKLNQGQTVDNQNAEDQREA
LKKYTTDLTERARNGKLDPVIGRDDEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPESLRGKRLLVL
DLAALIAGAKFRGEFEERLKAVLNDLAKDDGNSLIFIDEIHTLVGAGKSDGAMDAGNMLKPALARGELHCIGATTLDEYR
QYIEKDAALERRFQKVLVDEPSVEATIAILRGLQERYEIHHGVDITDPAIVAAAELSNRYITDRFLPDKAIDLIDEAASR
IKMELDSKPEQMDKLDRRIIQLQMEKMHVAKETDDASKKRLELIDEEIGNLQKEYADLDEIWKAEKASSVSSNDVKKQIE
DTRLKIEQAKRAGDFAKASELEYGVLPKLTQQLHAAESSGSLKQANKLFRTQVGAEEVAEIVSRMTGIPVSKMMEGEREK
LLKMEEVLHKRVVGQDEAVRAVADAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKTLANFLFDSEDHLIRIDMSEYM
EKHSIARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVVVMTS
NIGSQNIQEMGDTSDYAAVKEAVMDDVKAYFRPELINRIDEVVVFHGLSQANIRNIAKIQLIGLRNRLAAQNLRLEVSEA
ALDLIADAGFDPVYGARPLKRAIQAEIENPLAKALLNGQYTSDSVIRVDTNGDTLIFA

Nucleotide

• Length: 2577 bp

>NTDB_id=343720 GB851_RS07590 WP_032133984.1 1460265..1462841(+) (clpC) [Kingella kingae strain F41215CHC]
ATGCGATACGATAAATTAACCAGTAAATTCCAATCTATTTTACAAACCGCGCAAAGCTCGGCAATGGCTGCCGACCACGC
TTATGTGGAAGCGGCACACGTTGTGCAAGCCTTGTTGGACGACCACGAAAACGGCATGGCGGCATTGCTGGTGCAAGCTG
GCGGCAATGTCAGCCAAATCAAACAAAAAGTGCAGGCTGCTTTGAGTGCGCTACCCAAAATTTCGGGCAATGGTGGCGAT
ATTTCTGCTAGCCGTGAATTGCAAAACGCGCTCAATTTAATGGACAAGGCAGCAGTTAAACGCGGCGATACTTATATTGC
CAGCGAATTATTCTTGCTCGGCTTAATCCAAGAAAACGGTGCGACAGGCAAAATTTTAAAAGACGCTGGCGTAACCGAAG
CCAAATTGACCCAAGCGATTGAAAAACTCAACCAAGGACAAACTGTGGACAATCAAAACGCGGAAGACCAACGCGAAGCC
CTGAAAAAATACACCACCGATTTAACCGAACGCGCACGCAACGGCAAACTTGATCCTGTAATTGGGCGCGATGATGAAAT
TCGCCGCGCAATCCAAGTTTTGCAACGCCGCACGAAAAATAATCCTGTGTTAATCGGCGAACCGGGTGTCGGCAAAACGG
CGATTGTAGAAGGTTTGGCGCAACGCATTGTCAATGGCGAAGTGCCTGAATCATTGCGCGGTAAACGCTTGTTGGTGTTG
GATTTGGCGGCGTTGATTGCTGGCGCGAAATTTCGTGGTGAATTTGAAGAACGCTTGAAAGCGGTGCTGAATGATTTGGC
GAAAGATGACGGCAACAGCTTGATTTTTATTGATGAAATTCACACGCTGGTTGGCGCAGGCAAATCGGACGGCGCAATGG
ACGCGGGCAATATGTTGAAACCAGCTTTGGCGCGTGGCGAATTGCATTGCATTGGCGCAACCACGTTGGACGAATATCGC
CAATATATTGAGAAAGACGCGGCTTTGGAACGCCGTTTCCAAAAAGTGTTGGTTGATGAGCCGAGCGTGGAAGCGACGAT
TGCGATTTTACGCGGTTTGCAAGAGCGTTACGAAATTCATCACGGTGTGGACATCACCGACCCTGCGATTGTGGCGGCGG
CGGAATTGTCTAATCGCTACATTACCGACCGCTTTTTGCCTGATAAAGCGATTGATTTGATTGATGAAGCCGCCAGTCGC
ATTAAAATGGAATTGGATTCCAAACCCGAGCAAATGGATAAACTTGACCGCCGTATTATTCAACTGCAAATGGAAAAAAT
GCACGTGGCGAAAGAAACCGATGATGCAAGTAAAAAACGCTTGGAATTGATTGATGAAGAAATTGGCAACCTGCAAAAAG
AATACGCGGATTTGGACGAAATTTGGAAAGCGGAAAAAGCGTCTTCTGTGAGTTCCAATGATGTGAAAAAACAAATTGAA
GACACGCGCTTGAAAATTGAACAAGCGAAACGCGCTGGCGATTTTGCAAAAGCGTCTGAATTGGAATATGGCGTGTTGCC
GAAATTGACGCAGCAATTACACGCGGCGGAATCTTCAGGCAGCCTGAAACAAGCGAATAAATTGTTCCGCACGCAAGTGG
GCGCGGAAGAGGTGGCGGAAATCGTGTCGCGCATGACGGGCATTCCTGTTTCCAAAATGATGGAAGGCGAACGCGAAAAA
TTGTTGAAAATGGAAGAAGTCTTACACAAGCGTGTTGTCGGTCAAGATGAAGCAGTACGCGCGGTGGCGGACGCGATTCG
CCGTAGCCGTAGCGGTTTGGCAGACCCGAATAAACCTTACGGCAGTTTCTTGTTTTTGGGTCCGACTGGCGTGGGTAAAA
CGGAATTGTGCAAAACATTGGCGAATTTCTTGTTCGACAGCGAAGACCATTTAATCCGCATTGATATGTCGGAATATATG
GAAAAACACAGCATTGCGCGTTTAATCGGTGCGCCTCCGGGCTATGTGGGCTACGAAGAAGGCGGTTATTTGACCGAACA
AGTTCGCCGCAAACCATACAGCGTTATTTTGTTGGACGAAGTGGAAAAAGCGCACCCTGATGTGTTCAATATTTTGCTGC
AAGTGCTGGACGATGGGCGTTTGACGGACGGTCAAGGGCGCACGGTGGATTTTAAAAATACAGTTGTGGTGATGACTTCC
AATATTGGCAGTCAAAATATTCAGGAAATGGGCGACACGTCCGATTATGCGGCGGTGAAAGAAGCAGTAATGGACGATGT
GAAAGCGTATTTCCGCCCTGAATTGATTAACCGTATTGATGAAGTGGTCGTGTTCCATGGTTTGAGTCAGGCGAATATTC
GTAATATTGCGAAAATTCAACTGATTGGCTTGCGAAATCGTTTGGCGGCGCAGAATTTGCGTTTGGAAGTGTCGGAAGCG
GCGTTGGATTTGATTGCCGATGCTGGTTTTGACCCTGTGTACGGTGCGCGTCCGCTCAAACGTGCCATTCAGGCGGAAAT
TGAAAATCCATTGGCAAAAGCATTGCTGAATGGACAATACACGTCTGATAGCGTGATTCGTGTTGATACAAATGGCGATA
CGTTGATTTTTGCTTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (203-335)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-143)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• AAA lid domain (AAA_lid_9) (342-442)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-762)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (768-848)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.915	100	0.47
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	39.726	100	0.406
clpC	Lactococcus lactis subsp. cremoris KW2	46.009	80.303	0.369