Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   GB851_RS07575 Genome accession   NZ_CP045141
Coordinates   1458716..1459405 (-) Length   229 a.a.
NCBI ID   WP_003791157.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1453716..1464405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS07550 (GB851_07745) - 1454207..1454482 (-) 276 WP_003787496.1 septum formation initiator family protein -
  GB851_RS07555 (GB851_07755) eno 1454775..1456061 (-) 1287 WP_038311287.1 phosphopyruvate hydratase -
  GB851_RS07560 (GB851_07760) gloA 1456173..1456574 (-) 402 WP_003787492.1 lactoylglutathione lyase -
  GB851_RS07565 (GB851_07765) - 1456687..1457646 (+) 960 WP_038311523.1 beta-ketoacyl-ACP synthase III -
  GB851_RS07570 (GB851_07770) htpX 1457818..1458657 (+) 840 WP_003787488.1 protease HtpX -
  GB851_RS07575 (GB851_07775) radC 1458716..1459405 (-) 690 WP_003791157.1 DNA repair protein RadC Machinery gene
  GB851_RS07580 (GB851_07780) - 1459479..1459913 (-) 435 WP_019389565.1 META domain-containing protein -
  GB851_RS07590 (GB851_07790) clpC 1460265..1462841 (+) 2577 WP_032133984.1 ATP-dependent chaperone ClpB Regulator
  GB851_RS07595 (GB851_07795) - 1462978..1463865 (+) 888 WP_164538265.1 transferrin-binding protein-like solute binding protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25457.05 Da        Isoelectric Point: 6.5627

>NTDB_id=343719 GB851_RS07575 WP_003791157.1 1458716..1459405(-) (radC) [Kingella kingae strain F41215CHC]
MSIKHWEEGERPREKLLQRGAEALSDAELLAILLRVGTQGMSAVDLARSLLQNYGGLGGVMTASVQDLSRHKGMGTAAFA
QFAAVLEIGRRVLSEEMQEQPAFHSPNQVADYLRLRIGRERVEVSVALFLDTQHRLIACEELARGTVMANHVYVAEVARR
ALHHHAVSVVFAHNHPSGSLQPSPEDLAFTHKLQAALHWLDLRLLDHFIVTAYGAVSFAEQKWLTEIED

Nucleotide


Download         Length: 690 bp        

>NTDB_id=343719 GB851_RS07575 WP_003791157.1 1458716..1459405(-) (radC) [Kingella kingae strain F41215CHC]
ATGAGCATCAAACATTGGGAAGAGGGTGAACGTCCGCGCGAAAAGTTGTTGCAACGTGGCGCAGAAGCATTGAGCGATGC
GGAATTGCTGGCGATTTTGTTGCGCGTTGGCACGCAAGGCATGAGCGCGGTGGATTTGGCGCGGTCGTTGTTGCAAAACT
ATGGCGGATTGGGCGGTGTGATGACGGCATCGGTGCAGGATTTGTCGCGCCACAAAGGCATGGGAACGGCGGCATTCGCG
CAATTTGCGGCGGTGTTGGAAATTGGTCGGCGCGTGTTAAGCGAAGAGATGCAAGAGCAGCCTGCATTTCATTCGCCCAA
CCAAGTTGCCGATTATTTGCGTTTACGCATTGGGCGCGAGCGCGTGGAAGTGAGCGTGGCGTTGTTTTTGGATACGCAGC
ATCGTTTGATTGCGTGCGAAGAACTGGCGCGTGGCACGGTGATGGCGAATCATGTGTATGTTGCCGAAGTGGCGCGGCGC
GCCTTGCATCATCATGCAGTGTCTGTAGTATTTGCGCACAATCATCCGTCTGGCAGCCTGCAACCATCGCCCGAAGATTT
GGCGTTTACCCATAAATTGCAGGCTGCTTTGCATTGGTTGGATTTGCGTTTGCTTGACCATTTTATTGTTACGGCATATG
GCGCGGTTTCGTTTGCAGAACAAAAGTGGCTGACTGAGATTGAGGATTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

39.91

97.38

0.389

Multiple sequence alignment