Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   EWA65_RS14105 Genome accession   NZ_CP035689
Coordinates   220737..221831 (+) Length   364 a.a.
NCBI ID   WP_095468918.1    Uniprot ID   -
Organism   Vibrio metoecus strain 08-2459     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 215737..226831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS14075 - 216924..217175 (-) 252 WP_009355552.1 YgjV family protein -
  EWA65_RS14080 - 217567..217887 (-) 321 WP_001089529.1 DUF496 family protein -
  EWA65_RS14085 - 218075..218272 (+) 198 WP_001222790.1 hypothetical protein -
  EWA65_RS14090 - 218314..218964 (+) 651 WP_154139173.1 YceH family protein -
  EWA65_RS14095 - 218964..219269 (+) 306 WP_055027718.1 GIY-YIG nuclease family protein -
  EWA65_RS14100 traF 219370..220530 (+) 1161 WP_154139174.1 conjugal transfer protein TraF -
  EWA65_RS14105 luxP 220737..221831 (+) 1095 WP_095468918.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  EWA65_RS14110 luxQ 221851..224421 (+) 2571 WP_154139175.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  EWA65_RS14115 - 224413..225078 (-) 666 WP_000268205.1 PilZ domain-containing protein -
  EWA65_RS14120 - 225232..225750 (-) 519 WP_055027720.1 hypothetical protein -
  EWA65_RS14125 - 225962..226360 (-) 399 WP_055027721.1 YgiW/YdeI family stress tolerance OB fold protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41403.21 Da        Isoelectric Point: 6.1767

>NTDB_id=343718 EWA65_RS14105 WP_095468918.1 220737..221831(+) (luxP) [Vibrio metoecus strain 08-2459]
MKKKLMFSLLLTAALFSAEGYADSLKGYWHYDEFLAEFPEQHQLTDQLAKTVRDKPIPLGIEQKQPVVISVVYPGQQISD
YWVRNIKAFEKRMDELGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLQSSQTKLILQNI
TTPVKDWQGRQPMMYIGFDHELGALQLAKHYQAMAPSKPYSVLYFSEGYISEARGDTFIQQMNEAQRFQLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDIALGAAQALKELGRQDILLNGWGGGSAELEALANGELNMTVMRMNDDTGVAMAE
AIKWDLEGKMVPLVYSGDFEIVTQQDSAKHVEALKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=343718 EWA65_RS14105 WP_095468918.1 220737..221831(+) (luxP) [Vibrio metoecus strain 08-2459]
ATGAAAAAAAAGCTAATGTTCTCGCTGCTTTTAACAGCAGCACTCTTCAGTGCAGAAGGTTACGCCGATTCACTCAAAGG
TTATTGGCATTACGATGAGTTTCTCGCGGAGTTCCCCGAACAACATCAGTTGACGGATCAACTGGCGAAAACGGTTCGAG
ATAAACCAATCCCTCTTGGTATTGAGCAAAAACAACCCGTGGTGATTTCTGTTGTTTACCCAGGGCAACAAATCTCGGAC
TATTGGGTTCGGAACATCAAAGCTTTTGAAAAAAGGATGGATGAACTCGGGATTCGCTACCAAATTAATCAAGTCTTTAC
TCGCCCTAATCTCGATACTCGCCAACAAAGTGTTTCATTGATGGAAGCACTCAAAAACAAAAGCGATTATCTGATCTTTA
CACTAGATACGACGCGTCATCGCAAGTTTATTGAGCACGTACTACAGTCATCGCAAACTAAATTGATATTACAAAACATC
ACGACGCCAGTGAAAGATTGGCAAGGCCGACAGCCCATGATGTATATCGGTTTCGACCATGAGTTAGGGGCGCTGCAATT
AGCGAAACACTACCAAGCGATGGCTCCGAGCAAACCATACTCGGTCCTGTATTTCTCTGAGGGCTATATCAGCGAAGCGC
GCGGAGATACGTTCATTCAACAAATGAATGAAGCGCAGCGTTTTCAGCTCGCCTCTTCTTATTACACTAAGGCGACCGAG
CAAAGTGGGTATGAGGCGACCTTGAACATAGTCAAGAACAACCCAGAAATTGGGTTTATTTATGCGTGTGCCACAGACAT
TGCTTTGGGCGCAGCTCAAGCGTTAAAAGAACTGGGGCGGCAGGATATTCTACTCAATGGTTGGGGTGGGGGCTCTGCGG
AGTTGGAGGCGTTGGCCAATGGCGAACTCAATATGACCGTGATGCGTATGAATGATGATACGGGAGTGGCGATGGCGGAA
GCGATTAAATGGGATCTGGAAGGCAAAATGGTGCCTTTGGTATATTCCGGAGATTTTGAAATCGTGACTCAACAAGACTC
CGCCAAACACGTTGAAGCATTGAAAGCCCGCGCGTTCCGTTATTCAGATCGCTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

84.89

100

0.849

Multiple sequence alignment